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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MineICA_1.34.0.tar.gz && rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MineICA_1.34.0.zip && rm MineICA_1.34.0.tar.gz MineICA_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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 81  721k   81  590k    0     0   756k      0 --:--:-- --:--:-- --:--:--  756k
100  721k  100  721k    0     0   808k      0 --:--:-- --:--:-- --:--:--  808k

install for i386

* installing *source* package 'MineICA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sampleNames<-' in package 'MineICA'
** help
*** installing help indices
  converting help for package 'MineICA'
    finding HTML links ... done
    A                                       html  
    Alist                                   html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmAFXnS/R.INSTALL271c69f47cc1/MineICA/man/Alist.Rd:26: missing link 'class-IcaSet'
    Slist                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmAFXnS/R.INSTALL271c69f47cc1/MineICA/man/Slist.Rd:28: missing link 'class-IcaSet'
    addGenesToGoReport                      html  
    annot2Color                             html  
    annotCarbayo                            html  
    annotFeatures                           html  
    annotFeaturesComp                       html  
    annotFeaturesWithBiomaRt                html  
    annotInGene                             html  
    annotReciprocal                         html  
    buildIcaSet                             html  
    buildMineICAParams                      html  
    build_sortHeatmap                       html  
    class-IcaSet                            html  
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmAFXnS/R.INSTALL271c69f47cc1/MineICA/man/class-IcaSet.Rd:321: missing link 'class-IcaSet'
    class-MineICAParams                     html  
    clusVarAnalysis                         html  
    clusterFastICARuns                      html  
    clusterSamplesByComp                    html  
    clusterSamplesByComp_multiple           html  
    compareAn                               html  
    compareAn2graphfile                     html  
    compareGenes                            html  
    cor2An                                  html  
    correl2Comp                             html  
    dat                                     html  
    dataCarbayo                             html  
    doEnrichment                            html  
    getComp                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmAFXnS/R.INSTALL271c69f47cc1/MineICA/man/getComp.Rd:33: missing link 'class-IcaSet'
    getProj                                 html  
    getSdExpr                               html  
    hgOver                                  html  
    hypergeoAn                              html  
    icaSetCarbayo                           html  
    icaSetKim                               html  
    icaSetRiester                           html  
    icaSetStransky                          html  
    indComp                                 html  
    mergeGostatsResults                     html  
    nbOccByGeneInComp                       html  
    nbOccInComp                             html  
    nbOccInComp_simple                      html  
    nodeAttrs                               html  
    plotAllMix                              html  
    plotCorGraph                            html  
    plotDens2classInComp_plotOnly           html  
    plotDensAllAnnotInAllComp               html  
    plotDensOneAnnotInAllComp               html  
    plotMclust                              html  
    plotMix                                 html  
    plotPosAnnotInComp                      html  
    plotPosOneAnnotInComp_ggplot            html  
    plotPosOneAnnotLevInComp_ggplot         html  
    plotPosSamplesInComp                    html  
    plot_heatmapsOnSel                      html  
    qualVarAnalysis                         html  
    quantVarAnalysis                        html  
    readA                                   html  
    readS                                   html  
    relativePath                            html  
    runAn                                   html  
    runCompareIcaSets                       html  
    runEnrich                               html  
    runICA                                  html  
    selectContrib                           html  
    selectFeatures_IQR                      html  
    selectWitnessGenes                      html  
    wilcoxOrKruskalOnA                      html  
    writeGenes                              html  
    writeGostatsHtmltable                   html  
    writeHtmlResTestsByAnnot                html  
    writeProjByComp                         html  
    writeRnkFiles                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MineICA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MineICA' as MineICA_1.34.0.zip
* DONE (MineICA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MineICA' successfully unpacked and MD5 sums checked