Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:32 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the LiquidAssociation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/LiquidAssociation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1004/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LiquidAssociation 1.48.0 (landing page) Yen-Yi Ho
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: LiquidAssociation |
Version: 1.48.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:LiquidAssociation.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings LiquidAssociation_1.48.0.tar.gz |
StartedAt: 2022-04-12 08:00:25 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 08:01:57 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 91.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LiquidAssociation.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:LiquidAssociation.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings LiquidAssociation_1.48.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/LiquidAssociation.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘LiquidAssociation/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘LiquidAssociation’ version ‘1.48.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘LiquidAssociation’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘geepack’ ‘org.Sc.sgd.db’ ‘yeastCC’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CNM.full,matrix: no visible global function definition for ‘geese’ CNM.full,matrix: no visible binding for global variable ‘groupid’ CNM.full,matrix: no visible binding for global variable ‘visit’ CNM.full,matrix: no visible global function definition for ‘geese.control’ CNM.simple,matrix: no visible global function definition for ‘geese’ CNM.simple,matrix: no visible binding for global variable ‘groupid’ CNM.simple,matrix: no visible binding for global variable ‘visit’ CNM.simple,matrix: no visible global function definition for ‘geese.control’ Undefined global functions or variables: geese geese.control groupid visit * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.14-bioc/meat/LiquidAssociation.Rcheck/00check.log’ for details.
LiquidAssociation.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL LiquidAssociation ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘LiquidAssociation’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LiquidAssociation)
LiquidAssociation.Rcheck/LiquidAssociation-Ex.timings
name | user | system | elapsed | |
CNM-class | 0.001 | 0.000 | 0.001 | |
CNM.full-methods | 0.019 | 0.000 | 0.020 | |
CNM.simple-methods | 0.010 | 0.000 | 0.011 | |
GLA-methods | 0.004 | 0.000 | 0.004 | |
LA-methods | 0.001 | 0.000 | 0.001 | |
LiquidAssociation-package | 0.07 | 0.00 | 0.07 | |
getsGLA-methods | 3.649 | 0.044 | 3.693 | |
getsLA-methods | 2.537 | 0.031 | 2.570 | |
plotGLA-methods | 0.025 | 0.000 | 1.027 | |