Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:11 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the IMPCdata package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/IMPCdata.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 928/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IMPCdata 1.30.0 (landing page) Jeremy Mason
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: IMPCdata |
Version: 1.30.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings IMPCdata_1.30.0.tar.gz |
StartedAt: 2022-04-12 14:27:06 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 14:29:01 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 115.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMPCdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings IMPCdata_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/IMPCdata.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IMPCdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IMPCdata’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IMPCdata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPhenCenters 0.308 0.025 17.358 getAlleles 0.148 0.015 5.386 getPipelines 0.146 0.011 5.481 getProcedures 0.143 0.010 6.818 printProcedures 0.135 0.010 6.485 printPipelines 0.125 0.010 6.878 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
name | user | system | elapsed | |
getAlleles | 0.148 | 0.015 | 5.386 | |
getGenes | 0.148 | 0.010 | 4.313 | |
getIMPCDataset | 0.273 | 0.013 | 2.363 | |
getIMPCTable | 0.094 | 0.012 | 3.321 | |
getName | 0.021 | 0.001 | 0.739 | |
getParameters | 0.137 | 0.010 | 3.901 | |
getPhenCenters | 0.308 | 0.025 | 17.358 | |
getPipelines | 0.146 | 0.011 | 5.481 | |
getProcedures | 0.143 | 0.010 | 6.818 | |
getStrains | 0.076 | 0.006 | 4.649 | |
getZygosities | 0.029 | 0.002 | 0.580 | |
printAlleles | 0.135 | 0.009 | 4.599 | |
printGenes | 0.134 | 0.011 | 3.771 | |
printParameters | 0.127 | 0.010 | 4.204 | |
printPhenCenters | 0.041 | 0.004 | 4.701 | |
printPipelines | 0.125 | 0.010 | 6.878 | |
printProcedures | 0.135 | 0.010 | 6.485 | |
printStrains | 0.066 | 0.006 | 3.724 | |