############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCBricks_1.12.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.12.0.zip && rm HiCBricks_1.12.0.tar.gz HiCBricks_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 16 2314k 16 382k 0 0 666k 0 0:00:03 --:--:-- 0:00:03 666k 75 2314k 75 1740k 0 0 1112k 0 0:00:02 0:00:01 0:00:01 1113k 100 2314k 100 2314k 0 0 1260k 0 0:00:01 0:00:01 --:--:-- 1260k install for i386 * installing *source* package 'HiCBricks' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HiCBricks' finding HTML links ... done BrickContainer_change_experiment_name html BrickContainer_change_output_directory html BrickContainer_get_path_to_file html BrickContainer_list_chromosomes html BrickContainer_list_experiment_name html BrickContainer_list_files html BrickContainer_list_output_directory html BrickContainer_list_resolutions html BrickContainer_unlink_resolution html Brick_add_ranges html Brick_call_compartments html Brick_export_to_sparse html Brick_fetch_range_index html Brick_fetch_row_vector html Brick_get_bintable html Brick_get_chrominfo html Brick_get_entire_matrix html Brick_get_matrix html Brick_get_matrix_mcols html Brick_get_matrix_within_coords html Brick_get_ranges html Brick_get_values_by_distance html Brick_get_vector_values html Brick_list_matrices html Brick_list_matrix_mcols html Brick_list_mcool_normalisations html Brick_list_mcool_resolutions html Brick_list_rangekeys html Brick_list_ranges_mcols html Brick_load_cis_matrix_till_distance html Brick_load_data_from_mcool html Brick_load_data_from_sparse html Brick_load_matrix html Brick_local_score_differentiator html Brick_make_ranges html Brick_matrix_dimensions html Brick_matrix_exists html Brick_matrix_filename html Brick_matrix_isdone html Brick_matrix_issparse html Brick_matrix_maxdist html Brick_matrix_minmax html Brick_mcool_normalisation_exists html Brick_rangekey_exists html Brick_return_region_position html Brick_vizart_plot_heatmap html Create_many_Bricks html Create_many_Bricks_from_mcool html HiCBricks html load_BrickContainer html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'HiCBricks' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'HiCBricks' as HiCBricks_1.12.0.zip * DONE (HiCBricks) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'HiCBricks' successfully unpacked and MD5 sums checked