| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:37 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GenomicSuperSignature package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/GenomicSuperSignature.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 758/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicSuperSignature 1.2.1 (landing page) Sehyun Oh
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GenomicSuperSignature |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicSuperSignature_1.2.1.tar.gz && rm -rf GenomicSuperSignature.buildbin-libdir && mkdir GenomicSuperSignature.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicSuperSignature.buildbin-libdir GenomicSuperSignature_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicSuperSignature_1.2.1.zip && rm GenomicSuperSignature_1.2.1.tar.gz GenomicSuperSignature_1.2.1.zip |
| StartedAt: 2022-04-12 07:24:04 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:25:40 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 95.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicSuperSignature_1.2.1.tar.gz && rm -rf GenomicSuperSignature.buildbin-libdir && mkdir GenomicSuperSignature.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicSuperSignature.buildbin-libdir GenomicSuperSignature_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicSuperSignature_1.2.1.zip && rm GenomicSuperSignature_1.2.1.tar.gz GenomicSuperSignature_1.2.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
14 3750k 14 556k 0 0 886k 0 0:00:04 --:--:-- 0:00:04 887k
45 3750k 45 1711k 0 0 1050k 0 0:00:03 0:00:01 0:00:02 1049k
77 3750k 77 2925k 0 0 1106k 0 0:00:03 0:00:02 0:00:01 1106k
100 3750k 100 3750k 0 0 1218k 0 0:00:03 0:00:03 --:--:-- 1219k
install for i386
* installing *source* package 'GenomicSuperSignature' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicSuperSignature'
finding HTML links ... done
GenomicSignatures-class html
GenomicSignatures-methods html
PCAGenomicSignatures-class html
PCAGenomicSignatures-methods html
PCAGenomicSignatures html
PCinRAV html
annotatePC html
annotateRAV html
buildAvgLoading html
calculateScore html
dot-RAVName html
dot-calculateSilhouetteWidth html
dot-loadingCor html
drawWordcloud html
droplist html
extractPC html
findKeywordInRAV html
findSignature html
findStudiesInCluster html
getModel html
heatmapTable html
makeGeneList html
meshTable html
miniAllZ html
miniRAVmodel html
miniTCGA html
msigdb_gsea html
plotAnnotatedPCA html
plotValidate html
res_hcut html
rmNaInf html
rowNorm html
run_gsea html
sampleScoreHeatmap html
subsetEnrichedPathways html
subsetGSEA html
validate html
validatedSignatures html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicSuperSignature' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicSuperSignature' as GenomicSuperSignature_1.2.1.zip
* DONE (GenomicSuperSignature)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GenomicSuperSignature' successfully unpacked and MD5 sums checked