Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:30 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for EGAD on tokay2


To the developers/maintainers of the EGAD package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/EGAD.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 568/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EGAD 1.22.0  (landing page)
Sara Ballouz
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/EGAD
git_branch: RELEASE_3_14
git_last_commit: dc2b9cc
git_last_commit_date: 2021-10-26 12:27:52 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: EGAD
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EGAD_1.22.0.tar.gz && rm -rf EGAD.buildbin-libdir && mkdir EGAD.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EGAD.buildbin-libdir EGAD_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EGAD_1.22.0.zip && rm EGAD_1.22.0.tar.gz EGAD_1.22.0.zip
StartedAt: 2022-04-12 06:55:01 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:57:16 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 134.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EGAD_1.22.0.tar.gz && rm -rf EGAD.buildbin-libdir && mkdir EGAD.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EGAD.buildbin-libdir EGAD_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EGAD_1.22.0.zip && rm EGAD_1.22.0.tar.gz EGAD_1.22.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 14.5M    2  408k    0     0   992k      0  0:00:15 --:--:--  0:00:15  991k
 15 14.5M   15 2334k    0     0  1656k      0  0:00:09  0:00:01  0:00:08 1656k
 34 14.5M   34 5072k    0     0  2132k      0  0:00:06  0:00:02  0:00:04 2132k
 59 14.5M   59 8889k    0     0  2631k      0  0:00:05  0:00:03  0:00:02 2630k
 91 14.5M   91 13.3M    0     0  3114k      0  0:00:04  0:00:04 --:--:-- 3114k
100 14.5M  100 14.5M    0     0  3221k      0  0:00:04  0:00:04 --:--:-- 3439k

install for i386

* installing *source* package 'EGAD' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EGAD'
    finding HTML links ... done
    GO.human                                html  
    GO.mouse                                html  
    GO.voc                                  html  
    assortativity                           html  
    atrr.human                              html  
    attr.mouse                              html  
    auc_multifunc                           html  
    auprc                                   html  
    auroc_analytic                          html  
    biogrid                                 html  
    build_binary_network                    html  
    build_coexp_GEOID                       html  
    build_coexp_expressionSet               html  
    build_coexp_network                     html  
    build_semantic_similarity_network       html  
    build_weighted_network                  html  
    calculate_multifunc                     html  
    conv_smoother                           html  
    example_annotations                     html  
    example_binary_network                  html  
    example_coexpression                    html  
    example_neighbor_voting                 html  
    extend_network                          html  
    filter_network                          html  
    filter_network_cols                     html  
    filter_network_rows                     html  
    filter_orthologs                        html  
    fmeasure                                html  
    genes                                   html  
    get_auc                                 html  
    get_biogrid                             html  
    get_counts                              html  
    get_density                             html  
    get_expression_data_gemma               html  
    get_expression_matrix_from_GEO          html  
    get_phenocarta                          html  
    get_prc                                 html  
    get_roc                                 html  
    make_annotations                        html  
    make_gene_network                       html  
    make_genelist                           html  
    make_transparent                        html  
    neighbor_voting                         html  
    node_degree                             html  
    ortho                                   html  
    pheno                                   html  
    plot_densities                          html  
    plot_density_compare                    html  
    plot_distribution                       html  
    plot_network_heatmap                    html  
    plot_prc                                html  
    plot_roc                                html  
    plot_roc_overlay                        html  
    plot_value_compare                      html  
    predictions                             html  
    repmat                                  html  
    run_GBA                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EGAD' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EGAD' as EGAD_1.22.0.zip
* DONE (EGAD)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'EGAD' successfully unpacked and MD5 sums checked