############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL EBImage ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘EBImage’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c EBImage.c -o EBImage.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c clahe.c -o clahe.o clahe.c:223:19: warning: operator '>>' has lower precedence than '+'; '+' will be evaluated first [-Wshift-op-parentheses] uiSubY = uiYSize+1 >> 1; uiYU = uiNrY-1; uiYB = uiYU; ~~~~~~~^~ ~~ clahe.c:223:19: note: place parentheses around the '+' expression to silence this warning uiSubY = uiYSize+1 >> 1; uiYU = uiNrY-1; uiYB = uiYU; ^ ( ) clahe.c:235:23: warning: operator '>>' has lower precedence than '+'; '+' will be evaluated first [-Wshift-op-parentheses] uiSubX = uiXSize+1 >> 1; uiXL = uiNrX - 1; uiXR = uiXL; ~~~~~~~^~ ~~ clahe.c:235:23: note: place parentheses around the '+' expression to silence this warning uiSubX = uiXSize+1 >> 1; uiXL = uiNrX - 1; uiXR = uiXL; ^ ( ) 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c distmap.cpp -o distmap.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c drawCircle.c -o drawCircle.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c floodFill.cpp -o floodFill.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c getFrames.c -o getFrames.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c haralick.c -o haralick.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c medianFilter.c -o medianFilter.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c morphology.cpp -o morphology.o morphology.cpp:163:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:166:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:170:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ morphology.cpp:196:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:199:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:203:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ morphology.cpp:196:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:253:42: note: in instantiation of function template specialization 'compute_lookup_table_for_line_erode' requested here compute_lookup_table_for_line = &compute_lookup_table_for_line_erode; ^ morphology.cpp:340:9: note: in instantiation of function template specialization 'erode_dilate' requested here erode_dilate(x, res, size, nz, what, &set, T); ^ morphology.cpp:374:9: note: in instantiation of function template specialization '_morphology' requested here _morphology(INTEGER(x), INTEGER(res), size, nz, kernel, operation); ^ morphology.cpp:199:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:203:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ morphology.cpp:163:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:257:42: note: in instantiation of function template specialization 'compute_lookup_table_for_line_dilate' requested here compute_lookup_table_for_line = &compute_lookup_table_for_line_dilate; ^ morphology.cpp:340:9: note: in instantiation of function template specialization 'erode_dilate' requested here erode_dilate(x, res, size, nz, what, &set, T); ^ morphology.cpp:374:9: note: in instantiation of function template specialization '_morphology' requested here _morphology(INTEGER(x), INTEGER(res), size, nz, kernel, operation); ^ morphology.cpp:166:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:170:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ morphology.cpp:196:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:253:42: note: in instantiation of function template specialization 'compute_lookup_table_for_line_erode' requested here compute_lookup_table_for_line = &compute_lookup_table_for_line_erode; ^ morphology.cpp:340:9: note: in instantiation of function template specialization 'erode_dilate' requested here erode_dilate(x, res, size, nz, what, &set, T); ^ morphology.cpp:377:9: note: in instantiation of function template specialization '_morphology' requested here _morphology(REAL(x), REAL(res), size, nz, kernel, operation); ^ morphology.cpp:199:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:203:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ morphology.cpp:163:14: warning: expression result unused [-Wunused-value] for (i; i < 0; ++i) { ^ morphology.cpp:257:42: note: in instantiation of function template specialization 'compute_lookup_table_for_line_dilate' requested here compute_lookup_table_for_line = &compute_lookup_table_for_line_dilate; ^ morphology.cpp:340:9: note: in instantiation of function template specialization 'erode_dilate' requested here erode_dilate(x, res, size, nz, what, &set, T); ^ morphology.cpp:377:9: note: in instantiation of function template specialization '_morphology' requested here _morphology(REAL(x), REAL(res), size, nz, kernel, operation); ^ morphology.cpp:166:14: warning: expression result unused [-Wunused-value] for (i; i < maxX; ++i) { ^ morphology.cpp:170:14: warning: expression result unused [-Wunused-value] for (i; i < size.x + set->maxXoffset; ++i) { ^ 18 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nativeRaster.c -o nativeRaster.o nativeRaster.c:38:7: warning: assigning to 'uint32_t *' (aka 'unsigned int *') from 'int *' converts between pointers to integer types with different sign [-Wpointer-sign] out = INTEGER(res); ^ ~~~~~~~~~~~~ 1 warning generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c normalize.c -o normalize.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c objects.c -o objects.o objects.c:21:30: warning: unused variable 'dp' [-Wunused-variable] double *obj, *src, *tgt, dp, val; ^ 1 warning generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ocontour.c -o ocontour.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c propagate.cpp -o propagate.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c spatial.c -o spatial.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c thresh.cpp -o thresh.o thresh.cpp:64:42: warning: unused variable 'i' [-Wunused-variable] int xi, yi, u, k, l, ou, nu, ov, nv, i; ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c tile.cpp -o tile.o tile.cpp:24:17: warning: unused variable 'ims' [-Wunused-variable] SEXP res, dm, ims; ^ tile.cpp:167:20: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~ .dx = tile.cpp:167:33: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~ .dy = tile.cpp:167:46: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~ .nx = tile.cpp:167:54: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~ .ny = tile.cpp:167:62: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~~~ .xoff = tile.cpp:167:71: warning: use of GNU old-style field designator extension [-Wgnu-designator] Dims d = (Dims) {dx: sdim[0], dy: sdim[1], nx: nx, ny: ny, xoff: 0, yoff: 0}; ^~~~~ .yoff = tile.cpp:163:11: warning: unused variable 'src' [-Wunused-variable] double *src, *tgt; ^ tile.cpp:162:18: warning: unused variable 'dat' [-Wunused-variable] SEXP res, dim, dat; ^ tile.cpp:163:17: warning: unused variable 'tgt' [-Wunused-variable] double *src, *tgt; ^ tile.cpp:161:29: warning: unused variable 'y' [-Wunused-variable] int nprotect=0, i, j, im, y, iim; ^ 11 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c tools.c -o tools.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c transpose.cpp -o transpose.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c watershed.cpp -o watershed.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EBImage.so EBImage.o clahe.o distmap.o drawCircle.o floodFill.o getFrames.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o transpose.o watershed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-EBImage/00new/EBImage/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘abind’ in package ‘EBImage’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EBImage)