Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:26 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the DeepBlueR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/DeepBlueR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 469/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeepBlueR 1.20.0 (landing page) Felipe Albrecht
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: DeepBlueR |
Version: 1.20.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DeepBlueR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings DeepBlueR_1.20.0.tar.gz |
StartedAt: 2022-04-12 18:21:05 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 18:28:10 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 425.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DeepBlueR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DeepBlueR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings DeepBlueR_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/DeepBlueR.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DeepBlueR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DeepBlueR' version '1.20.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DeepBlueR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: deepblue_enrich_regions_fast.Rd:35-38: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed deepblue_batch_export_results 1.36 0.28 5.19 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed deepblue_enrich_regions_overlap 0.77 0.16 7.44 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/DeepBlueR.Rcheck/00check.log' for details.
DeepBlueR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DeepBlueR_1.20.0.tar.gz && rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DeepBlueR_1.20.0.zip && rm DeepBlueR_1.20.0.tar.gz DeepBlueR_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 523k 34 179k 0 0 641k 0 --:--:-- --:--:-- --:--:-- 641k 100 523k 100 523k 0 0 1037k 0 --:--:-- --:--:-- --:--:-- 1037k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md' * installing *source* package 'DeepBlueR' ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices converting help for package 'DeepBlueR' finding HTML links ... done DeepBlueCommand-class html deepblue_aggregate html deepblue_batch_export_results html deepblue_binning html deepblue_cache_status html deepblue_cancel_request html deepblue_chromosomes html deepblue_clear_cache html deepblue_collection_experiments_count html deepblue_column_types html deepblue_commands html deepblue_convert_to_df html deepblue_convert_to_grange html deepblue_count_gene_ontology_terms html deepblue_count_regions html deepblue_coverage html deepblue_delete_request_from_cache html deepblue_diff html deepblue_distinct_column_values html deepblue_download_request_data-DeepBlueCommand-method html deepblue_download_request_data html deepblue_echo html deepblue_enrich_regions_fast html deepblue_enrich_regions_go_terms html deepblue_enrich_regions_overlap html deepblue_export_bed html deepblue_export_meta_data html deepblue_export_tab html deepblue_extend html deepblue_extract_ids html deepblue_extract_names html deepblue_faceting_experiments html deepblue_filter_regions html deepblue_find_motif html deepblue_flank html deepblue_format_object_size html deepblue_get_biosource_children html deepblue_get_biosource_parents html deepblue_get_biosource_related html deepblue_get_biosource_synonyms html deepblue_get_db html deepblue_get_experiments_by_query html deepblue_get_regions html deepblue_get_request_data html deepblue_info html deepblue_input_regions html deepblue_intersection html deepblue_is_biosource html deepblue_liftover html deepblue_list_annotations html deepblue_list_biosources html deepblue_list_cached_requests html deepblue_list_column_types html deepblue_list_epigenetic_marks html deepblue_list_experiments html deepblue_list_expressions html deepblue_list_gene_models html deepblue_list_genes html deepblue_list_genomes html deepblue_list_in_use html deepblue_list_projects html deepblue_list_recent_experiments html deepblue_list_requests html deepblue_list_samples html deepblue_list_similar_biosources html deepblue_list_similar_epigenetic_marks html deepblue_list_similar_experiments html deepblue_list_similar_genomes html deepblue_list_similar_projects html deepblue_list_similar_techniques html deepblue_list_techniques html deepblue_merge_queries html deepblue_meta_data_to_table html deepblue_name_to_id html deepblue_options html deepblue_overlap html deepblue_parse_gtf html deepblue_preview_experiment html deepblue_query_cache html deepblue_query_experiment_type html deepblue_reset_options html deepblue_score_matrix html deepblue_search html deepblue_select_annotations html deepblue_select_column html deepblue_select_experiments html deepblue_select_expressions html deepblue_select_genes html deepblue_select_regions html deepblue_switch_get_request_data html deepblue_tiling_regions html deepblue_wait_request html show-DeepBlueCommand-method html xml.rpc html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md' * installing *source* package 'DeepBlueR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DeepBlueR' as DeepBlueR_1.20.0.zip * DONE (DeepBlueR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'DeepBlueR' successfully unpacked and MD5 sums checked
DeepBlueR.Rcheck/examples_i386/DeepBlueR-Ex.timings
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DeepBlueR.Rcheck/examples_x64/DeepBlueR-Ex.timings
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