Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:20 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Clomial package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/Clomial.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 331/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Clomial 1.30.0 (landing page) Habil Zare
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: Clomial |
Version: 1.30.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Clomial.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Clomial_1.30.0.tar.gz |
StartedAt: 2022-04-12 17:26:13 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:31:41 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 328.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Clomial.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Clomial.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Clomial_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Clomial.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Clomial/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Clomial' version '1.30.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Clomial' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Clomial: no visible global function definition for 'runif' Clomial.generate.data: no visible global function definition for 'runif' Clomial.generate.data: no visible global function definition for 'rbinom' Clomial.likelihood: no visible global function definition for 'dbinom' Phi: no visible global function definition for 'dbinom' choose.best: no visible global function definition for 'tail' compute.P.reparam : update.Wj: no visible global function definition for 'optim' compute.q: no visible global function definition for 'dbinom' Undefined global functions or variables: dbinom optim rbinom runif tail Consider adding importFrom("stats", "dbinom", "optim", "rbinom", "runif") importFrom("utils", "tail") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed choose.best 50.08 1.99 60.42 Clomial-package 17.99 0.65 18.62 Clomial 16.43 0.57 17.02 compute.bic 11.58 0.37 11.95 Clomial.iterate 10.25 0.39 10.64 Clomial.likelihood 9.94 0.25 10.19 compute.errors 5.56 0.16 5.72 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed choose.best 59.02 2.11 61.14 Clomial 19.80 0.55 20.35 Clomial-package 18.88 0.57 19.45 compute.bic 12.48 0.25 12.73 Clomial.likelihood 8.79 0.21 9.00 Clomial.iterate 8.57 0.31 8.87 compute.errors 5.72 0.15 5.88 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Clomial.Rcheck/00check.log' for details.
Clomial.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Clomial_1.30.0.tar.gz && rm -rf Clomial.buildbin-libdir && mkdir Clomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clomial.buildbin-libdir Clomial_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Clomial_1.30.0.zip && rm Clomial_1.30.0.tar.gz Clomial_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 1290k 3 52437 0 0 265k 0 0:00:04 --:--:-- 0:00:04 265k 76 1290k 76 981k 0 0 801k 0 0:00:01 0:00:01 --:--:-- 801k 100 1290k 100 1290k 0 0 914k 0 0:00:01 0:00:01 --:--:-- 914k install for i386 * installing *source* package 'Clomial' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Clomial' finding HTML links ... done Clomial-package html Clomial html Clomial.generate.data html Clomial.iterate html Clomial.likelihood html Clomial1000 html breastCancer html choose.best html compute.bic html compute.errors html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Clomial' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Clomial' as Clomial_1.30.0.zip * DONE (Clomial) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'Clomial' successfully unpacked and MD5 sums checked
Clomial.Rcheck/examples_i386/Clomial-Ex.timings
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Clomial.Rcheck/examples_x64/Clomial-Ex.timings
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