Nancy Mah
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/CellScore |
| git_branch: RELEASE_3_14 |
| git_last_commit: f1b13c0 |
| git_last_commit_date: 2021-10-26 12:41:51 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:18 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CellScore package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/CellScore.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 274/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CellScore 1.14.0 (landing page) Nancy Mah
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CellScore |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CellScore_1.14.0.tar.gz |
| StartedAt: 2022-04-12 17:03:14 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 17:11:29 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 495.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CellScore.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CellScore_1.14.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CellScore.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellScore/DESCRIPTION' ... OK
* this is package 'CellScore' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CellScoreReport 34.53 1.79 36.33
heatmapOnOffMarkers 26.86 0.14 27.00
ScatterplotCellScoreComponents 22.94 0.44 23.37
extractTransitions 21.86 0.51 22.38
RugplotCellScore 21.72 0.16 21.88
PlotCosineSimHeatmap 17.41 0.17 17.57
BoxplotCellScore 16.15 0.66 16.82
CellScore 14.11 0.76 14.88
PcaStandards 12.35 0.50 12.86
CosineSimScore 11.86 0.84 12.70
BarplotOnOff 8.20 0.89 13.35
OnOff 6.02 0.30 6.31
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CellScoreReport 36.61 0.42 37.04
heatmapOnOffMarkers 25.72 0.31 26.03
RugplotCellScore 21.93 0.13 22.06
ScatterplotCellScoreComponents 21.71 0.17 21.89
extractTransitions 20.67 0.05 20.72
PlotCosineSimHeatmap 18.85 0.12 18.97
BoxplotCellScore 14.70 0.36 15.06
CellScore 14.56 0.35 14.90
PcaStandards 13.89 0.16 14.05
CosineSimScore 13.53 0.14 13.67
BarplotOnOff 7.19 1.00 8.18
OnOff 6.56 0.23 6.79
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
CellScore.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CellScore_1.14.0.tar.gz && rm -rf CellScore.buildbin-libdir && mkdir CellScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellScore.buildbin-libdir CellScore_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CellScore_1.14.0.zip && rm CellScore_1.14.0.tar.gz CellScore_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 4204k 6 268k 0 0 650k 0 0:00:06 --:--:-- 0:00:06 649k
40 4204k 40 1709k 0 0 1210k 0 0:00:03 0:00:01 0:00:02 1210k
76 4204k 76 3231k 0 0 1338k 0 0:00:03 0:00:02 0:00:01 1339k
100 4204k 100 4204k 0 0 1451k 0 0:00:02 0:00:02 --:--:-- 1451k
install for i386
* installing *source* package 'CellScore' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CellScore'
finding HTML links ... done
BarplotOnOff html
BoxplotCellScore html
CellScore html
CellScoreReport html
CosineSimScore html
OnOff html
PcaStandards html
PlotCosineSimHeatmap html
RugplotCellScore html
ScatterplotCellScoreComponents html
extractTransitions html
heatmapOnOffMarkers html
rugplotDonorTargetTest html
scatterplotDonorTargetTest html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CellScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellScore' as CellScore_1.14.0.zip
* DONE (CellScore)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CellScore' successfully unpacked and MD5 sums checked
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CellScore.Rcheck/examples_i386/CellScore-Ex.timings
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CellScore.Rcheck/examples_x64/CellScore-Ex.timings
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