############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CellScore_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CellScore.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CellScore/DESCRIPTION' ... OK * this is package 'CellScore' version '1.14.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CellScore' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CellScoreReport 34.53 1.79 36.33 heatmapOnOffMarkers 26.86 0.14 27.00 ScatterplotCellScoreComponents 22.94 0.44 23.37 extractTransitions 21.86 0.51 22.38 RugplotCellScore 21.72 0.16 21.88 PlotCosineSimHeatmap 17.41 0.17 17.57 BoxplotCellScore 16.15 0.66 16.82 CellScore 14.11 0.76 14.88 PcaStandards 12.35 0.50 12.86 CosineSimScore 11.86 0.84 12.70 BarplotOnOff 8.20 0.89 13.35 OnOff 6.02 0.30 6.31 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CellScoreReport 36.61 0.42 37.04 heatmapOnOffMarkers 25.72 0.31 26.03 RugplotCellScore 21.93 0.13 22.06 ScatterplotCellScoreComponents 21.71 0.17 21.89 extractTransitions 20.67 0.05 20.72 PlotCosineSimHeatmap 18.85 0.12 18.97 BoxplotCellScore 14.70 0.36 15.06 CellScore 14.56 0.35 14.90 PcaStandards 13.89 0.16 14.05 CosineSimScore 13.53 0.14 13.67 BarplotOnOff 7.19 1.00 8.18 OnOff 6.56 0.23 6.79 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK