Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:13 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Biobase package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/Biobase.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 152/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Biobase 2.54.0 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: Biobase |
Version: 2.54.0 |
Command: rm -rf Biobase.buildbin-libdir && mkdir Biobase.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Biobase.buildbin-libdir Biobase_2.54.0.tar.gz |
StartedAt: 2022-04-13 05:41:28 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 05:42:26 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 58.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Biobase_2.54.0.zip |
PackageFileSize: 2.424 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Biobase.buildbin-libdir && mkdir Biobase.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Biobase.buildbin-libdir Biobase_2.54.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'Biobase' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c anyMissing.c -o anyMissing.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c envir.c -o envir.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matchpt.c -o matchpt.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rowMedians.c -o rowMedians.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sublist_extract.c -o sublist_extract.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Biobase.dll tmp.def Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Biobase.buildbin-libdir/00LOCK-Biobase/00new/Biobase/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Biobase' finding HTML links ... done Aggregate html Biobase-package html ScalarObject-class html abstract html addVig2Menu html annotatedDataFrameFrom-methods html anyMissing html assayData html cache html channel html channelNames html class.AnnotatedDataFrame html finding level-2 HTML links ... done class.AssayData html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/Biobase.buildbin-libdir/00LOCK-Biobase/00new/Biobase/help/AssayData.html class.ExpressionSet html class.MIAME html class.MIAxE html class.MultiSet html class.NChannelSet html class.SnpSet html class.Versioned html class.VersionedBiobase html class.Versions html class.VersionsNull html class.aggregator html class.characterORmiame html class.container html class.eSet html classVersion html contents html copyEnv html copySubstitute html createPackage html data.aaMap html data.geneData html data.reporter html data.sample.ExpressionSet html data.sample.MultiSet html defunct html description html dumpPackTxt html esApply html exprs html featureData html featureNames html getPkgVigs html internals html isCurrent html isUnique html isVersioned html lcSuffix html listLen html makeDataPackage html matchpt html multiassign html note html notes html openPDF html openVignette html package.version html phenoData html protocolData html read.AnnotatedDataFrame html read.MIAME html readExpressionSet html reverseSplit html rowMedians html rowQ html selectChannels html selectSome html snpCall html storageMode html strbreak html subListExtract html testBioCConnection html updateObjectTo html updateOldESet html userQuery html validMsg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Biobase' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c anyMissing.c -o anyMissing.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c envir.c -o envir.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matchpt.c -o matchpt.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rowMedians.c -o rowMedians.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sublist_extract.c -o sublist_extract.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Biobase.dll tmp.def Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Biobase.buildbin-libdir/Biobase/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Biobase' as Biobase_2.54.0.zip * DONE (Biobase)