############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AnnotationDbi_1.56.2.tar.gz && rm -rf AnnotationDbi.buildbin-libdir && mkdir AnnotationDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnnotationDbi.buildbin-libdir AnnotationDbi_1.56.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AnnotationDbi_1.56.2.zip && rm AnnotationDbi_1.56.2.tar.gz AnnotationDbi_1.56.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 3850k 5 205k 0 0 420k 0 0:00:09 --:--:-- 0:00:09 421k 32 3850k 32 1269k 0 0 852k 0 0:00:04 0:00:01 0:00:03 851k 81 3850k 81 3121k 0 0 1257k 0 0:00:03 0:00:02 0:00:01 1257k 100 3850k 100 3850k 0 0 1402k 0 0:00:02 0:00:02 --:--:-- 1402k install for i386 * installing *source* package 'AnnotationDbi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'packageName' in package 'AnnotationDbi' Creating a generic function for 'ls' from package 'base' in package 'AnnotationDbi' Creating a generic function for 'eapply' from package 'base' in package 'AnnotationDbi' Creating a generic function for 'exists' from package 'base' in package 'AnnotationDbi' Creating a generic function for 'sample' from package 'base' in package 'AnnotationDbi' ** help *** installing help indices converting help for package 'AnnotationDbi' finding HTML links ... done AnnDbObj-class html AnnDbPkg-checker html AnnotationDb-class html AnnotationDbi-internals html Bimap-direction html Bimap-envirAPI html Bimap-keys html Bimap-toTable html Bimap html BimapFiltering html BimapFormatting html GOColsAndKeytypes html GOFrame html GOTerms-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/AnnotationDbi.buildbin-libdir/00LOCK-AnnotationDbi/00new/AnnotationDbi/help/Term.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/AnnotationDbi.buildbin-libdir/00LOCK-AnnotationDbi/00new/AnnotationDbi/help/Ontology.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/AnnotationDbi.buildbin-libdir/00LOCK-AnnotationDbi/00new/AnnotationDbi/help/Definition.html KEGGFrame html colsAndKeytypes html createSimpleBimap html inpIDMapper html makeGOGraph html make_eg_to_go_map html orgPackageName html organismKEGGFrame html print.probetable html toSQLStringSet html unlist2 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'AnnotationDbi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'AnnotationDbi' as AnnotationDbi_1.56.2.zip * DONE (AnnotationDbi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'AnnotationDbi' successfully unpacked and MD5 sums checked