##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AMARETTO_1.10.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.10.0.zip && rm AMARETTO_1.10.0.tar.gz AMARETTO_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 5470k    0  6537    0     0  81186      0  0:01:09 --:--:--  0:01:09 80703
 25 5470k   25 1399k    0     0  1274k      0  0:00:04  0:00:01  0:00:03 1273k
 66 5470k   66 3657k    0     0  1761k      0  0:00:03  0:00:02  0:00:01 1761k
100 5470k  100 5470k    0     0  2038k      0  0:00:02  0:00:02 --:--:-- 2038k

install for i386

* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AMARETTO'
    finding HTML links ... done
    AMARETTO_CreateModuleData               html  
    AMARETTO_CreateRegulatorPrograms        html  
    AMARETTO_Download                       html  
    AMARETTO_EvaluateTestSet                html  
    AMARETTO_ExportResults                  html  
    AMARETTO_HTMLreport                     html  
    AMARETTO_Initialize                     html  
    AMARETTO_LarsenBased                    html  
    AMARETTO_LearnRegulatoryProgramsLarsen
                                            html  
    AMARETTO_Preprocess                     html  
    AMARETTO_ReassignGenesToClusters        html  
    AMARETTO_Run                            html  
    AMARETTO_VisualizeModule                html  
    BatchData                               html  
    Beta.NA                                 html  
    ComBat_NoFiles                          html  
    CreateRegulatorData                     html  
    Driver_Genes                            html  
    FindTranscriptionallyPredictive_CNV     html  
    GeneSetDescription                      html  
    GmtFromModules                          html  
    HyperGTestGeneEnrichment                html  
    L                                       html  
    Lambda_Sequence                         html  
    MsigdbMapping                           html  
    Preprocess_MAdata                       html  
    ProcessedDataLIHC                       html  
    Save_CancerSite                         html  
    TCGA_BatchCorrection_MolecularData      html  
    TCGA_GENERIC_BatchCorrection            html  
    TCGA_GENERIC_CheckBatchEffect           html  
    TCGA_GENERIC_CleanUpSampleNames         html  
    TCGA_GENERIC_GetSampleGroups            html  
    TCGA_GENERIC_MergeData                  html  
    TCGA_Load_GISTICdata                    html  
    TCGA_Load_MolecularData                 html  
    aprior                                  html  
    bprior                                  html  
    build.design                            html  
    cacheResource                           html  
    computeGisticURL                        html  
    design.mat                              html  
    filter.absent                           html  
    geneFiltering                           html  
    get_firehoseData                        html  
    int.eprior                              html  
    it.sol                                  html  
    list.batch                              html  
    plot_run_history                        html  
    postmean                                html  
    postvar                                 html  
    printf                                  html  
    readGMT                                 html  
    read_gct                                html  
    trim.dat                                html  
    write_gct                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.10.0.zip
* DONE (AMARETTO)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'AMARETTO' successfully unpacked and MD5 sums checked