############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ACME_2.50.0.tar.gz && rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ACME_2.50.0.zip && rm ACME_2.50.0.tar.gz ACME_2.50.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 9442k 1 152k 0 0 708k 0 0:00:13 --:--:-- 0:00:13 707k 23 9442k 23 2263k 0 0 1892k 0 0:00:04 0:00:01 0:00:03 1892k 56 9442k 56 5356k 0 0 2439k 0 0:00:03 0:00:02 0:00:01 2439k 99 9442k 99 9369k 0 0 2907k 0 0:00:03 0:00:03 --:--:-- 2907k 100 9442k 100 9442k 0 0 2925k 0 0:00:03 0:00:03 --:--:-- 2925k install for i386 * installing *source* package 'ACME' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c windowChisq.c -o windowChisq.o windowChisq.c: In function 'windowChisq': windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] firstprobe>0) { ~~~~~~~~~~^~ windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] lastprobe<(na-1)) { ~~~~~~~~~^~~~~~~ windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable] double *xa,*xlocations,*xchivals; ^~ windowChisq.c: At top level: windowChisq.c:86:20: warning: initialization of 'void * (*)()' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types] {"windowChisq",&windowChisq,5}, ^ windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun') C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ACME' finding HTML links ... done ACMECalcSet-class html finding level-2 HTML links ... done ACMESet-class html aGFF-class html aGFFCalc-class html do.aGFF.calc html example.agff html findClosestGene html findRegions html generics html getRefflat html read.resultsGFF html write.bedGraph html write.sgr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ACME' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c windowChisq.c -o windowChisq.o windowChisq.c: In function 'windowChisq': windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] firstprobe>0) { ~~~~~~~~~~^~ windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] lastprobe<(na-1)) { ~~~~~~~~~^~~~~~~ windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable] double *xa,*xlocations,*xchivals; ^~ windowChisq.c: At top level: windowChisq.c:86:20: warning: initialization of 'void * (*)()' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types] {"windowChisq",&windowChisq,5}, ^ windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun') C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'ACME' as ACME_2.50.0.zip * DONE (ACME) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ACME' successfully unpacked and MD5 sums checked