BioC experimental data: CHECK report for ind1KG on perceval

Package: ind1KG

Version: 0.3.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.3.1.tar.gz

StartedAt: 2015-04-08 10:10:19 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 10:13:04 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 164.7 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.3.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/ind1KG.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ind1KG/DESCRIPTION’ ... OK
* this is package ‘ind1KG’ version ‘0.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ind1KG’ can be installed ... [3s/5s] OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [41s/41s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
n240  24.884  0.859  26.040
c6snp  9.649  0.313  10.046
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/ind1KG.Rcheck/00check.log’
for details.

* installing *source* package ‘ind1KG’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ind1KG)

name	user	system	elapsed
c6snp	9.649	0.313	10.046
gw6c6.snp240	0.173	0.010	0.185
n240	24.884	0.859	26.040
oregdf	0.005	0.000	0.006
pup240_500k	2.488	0.269	2.799
pup240_disc	0.069	0.003	0.073
rsgdf	0.007	0.001	0.008
yri240_6	0.460	0.017	0.483