BioC experimental data: CHECK report for RNAseqData.HNRNPC.bam.chr14 on perceval

Package: RNAseqData.HNRNPC.bam.chr14

Version: 0.3.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RNAseqData.HNRNPC.bam.chr14_0.3.2.tar.gz

StartedAt: 2015-04-08 10:32:44 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 10:34:46 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 122.0 seconds

RetCode: 0

Status:  OK

CheckDir: RNAseqData.HNRNPC.bam.chr14.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RNAseqData.HNRNPC.bam.chr14_0.3.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/RNAseqData.HNRNPC.bam.chr14.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAseqData.HNRNPC.bam.chr14/DESCRIPTION’ ... OK
* this is package ‘RNAseqData.HNRNPC.bam.chr14’ version ‘0.3.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAseqData.HNRNPC.bam.chr14’ can be installed ... [4s/9s] OK
* checking installed package size ... NOTE
  installed size is 420.2Mb
  sub-directories of 1Mb or more:
    extdata  420.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [42s/49s] OK
Examples with CPU or elapsed time > 5s
                                     user system elapsed
RNAseqData.HNRNPC.bam.chr14-package 39.62  1.803  47.884
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/RNAseqData.HNRNPC.bam.chr14.Rcheck/00check.log’
for details.

* installing *source* package ‘RNAseqData.HNRNPC.bam.chr14’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RNAseqData.HNRNPC.bam.chr14)

name	user	system	elapsed
RNAseqData.HNRNPC.bam.chr14-package	39.620	1.803	47.884