Neve2006 0.3.1
VJ Carey
| Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/Neve2006 | | Last Changed Rev: 3075 / Revision: 3266 | | Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### rm -rf Neve2006.buildbin-libdir Neve2006.Rcheck && mkdir Neve2006.buildbin-libdir Neve2006.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Neve2006.buildbin-libdir Neve2006_0.3.1.tar.gz >Neve2006.Rcheck\00install.out 2>&1 && cp Neve2006.Rcheck\00install.out Neve2006-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=Neve2006.buildbin-libdir --install="check:Neve2006-install.out" --force-multiarch --no-vignettes --timings Neve2006_0.3.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/Neve2006.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Neve2006/DESCRIPTION' ... OK
* this is package 'Neve2006' version '0.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Neve2006' can be installed ... OK
* checking installed package size ... NOTE
installed size is 70.5Mb
sub-directories of 1Mb or more:
data 15.1Mb
extdata 54.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'Biobase' 'annotate' 'hgu133a.db' 'methods' 'tools'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: 'Biobase:::assayDataDims'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[,cghExSet: no visible global function definition for 'assayDataNew'
[,cghExSet: no visible global function definition for 'exprs'
[,cghExSet: no visible global function definition for 'phenoData'
logRatios,cghExSet: no visible global function definition for
'assayDataElement'
logRatios,cghSet: no visible global function definition for
'assayDataElement'
show,cghExSet: no visible global function definition for 'storageMode'
show,cghExSet: no visible global function definition for 'selectSome'
show,cghExSet: no visible global function definition for 'featureNames'
show,cghExSet: no visible global function definition for 'dims'
show,cghExSet: no visible global function definition for 'phenoData'
show,cghExSet: no visible global function definition for
'experimentData'
show,cghExSet: no visible global function definition for 'annotation'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
cghExSet-class 1.24 0.03 14.33
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
NOTE: There were 3 notes.
See
'D:/biocbld/bbs-3.0-data-experiment/meat/Neve2006.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'Neve2006' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Neve2006' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Neve2006' as Neve2006_0.3.1.zip
* DONE (Neve2006)