BioC experimental data: CHECK report for FunciSNP.data on perceval

Package: FunciSNP.data

Version: 1.1.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch FunciSNP.data_1.1.1.tar.gz

StartedAt: 2015-04-08 09:48:57 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 09:53:15 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 258.1 seconds

RetCode: 1

Status:  ERROR

CheckDir: FunciSNP.data.Rcheck

Warnings: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch FunciSNP.data_1.1.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/FunciSNP.data.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FunciSNP.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FunciSNP.data’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FunciSNP.data’ can be installed ... [17s/25s] OK
* checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data      3.2Mb
    extdata   2.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘FunciSNP.data-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lincRNA.hg19.rda
> ### Title: Known long intergentic non coding RNA
> ### Aliases: lincRNA.hg19.rda lincRNA
> ### Keywords: datasets
> 
> ### ** Examples
> 
> lincRNA
RangedData with 14331 rows and 2 value columns across 41 spaces
Error in end(PartitioningByEnd(x)) : 
  error in evaluating the argument 'x' in selecting a method for function 'end': Error: could not find function "PartitioningByEnd"
Calls: <Anonymous> ... <Anonymous> -> fast_path_FUN -> .unlist_NL_subscript -> end
Execution halted

* installing *source* package ‘FunciSNP.data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FunciSNP.data)

name	user	system	elapsed
FunciSNP.builtin.features	0.614	0.028	1.046