pcaMethods 1.16.0
Wolfram Stacklies
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/pcaMethods | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/pcaMethods.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
asExprSet: no visible global function definition for 'exprs'
asExprSet: no visible global function definition for 'exprs<-'
kEstimateFast: no visible binding for global variable 'allVariables'
nni: no visible global function definition for 'exprs'
pca: no visible global function definition for 'exprs'
prep: no visible global function definition for 'exprs'
robustSvd: no visible binding for global variable 'verbose'
svdPca: no visible binding for global variable 'verbose'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating pcaMethods-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pcaMethods-manual.tex ... OK
* checking pcaMethods-manual.tex using pdflatex ... OK
* Installing *source* package 'pcaMethods' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: pls
Attaching package: 'pls'
The following object(s) are masked from package:stats :
loadings
Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
>>> Building/Updating help pages for package 'pcaMethods'
Formats: text html latex example
Q2 text html latex example
asExprSet text html latex
bpca text html latex example
checkData text html latex
class.nlpcaNet text html latex
class.nniRes text html latex
class.pcaRes text html latex
fitted.pcaRes text html latex
helix text html latex
kEstimate text html latex example
kEstimateFast text html latex example
llsImpute text html latex example
metaboliteData text html latex
metaboliteDataComplete text html latex
nipalsPca text html latex example
nlpca text html latex example
nni text html latex example
pca text html latex example
plotPcs text html latex example
plotR2 text html latex
ppca text html latex example
prep text html latex example
robustPca text html latex example
robustSvd text html latex example
slplot text html latex example
svdImpute text html latex example
svdPca text html latex example
** building package indices ...
* DONE (pcaMethods)