biocViews 1.8.0
Biocore Team c/o BioC user list
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biocViews | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/biocViews.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating biocViews-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biocViews-manual.tex ... OK
* checking biocViews-manual.tex using pdflatex ... OK
* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
** help
>>> Building/Updating help pages for package 'biocViews'
Formats: text html latex example
BiocView-class text html latex
Htmlized-class text html latex
PackageDetail-class text html latex example
RepositoryDetail-class text html latex
biocViews-package text html latex example
biocViewsVocab text html latex example
extractVignettes text html latex
genReposControlFiles text html latex
getBiocSubViews text html latex example
getBiocViews text html latex example
getPacksAndViews text html latex
getSubTerms text html latex example
htmlDoc text html latex
htmlFilename text html latex
htmlValue text html latex
writeBiocViews text html latex
writeHtmlDoc text html latex
writePackageDetailHtml text html latex
writeRepositoryHtml text html latex
writeTopLevelView text html latex
write_REPOSITORY text html latex
write_SYMBOLS text html latex
write_VIEWS text html latex
** building package indices ...
* DONE (biocViews)