EBImage 2.4.0
Oleg Sklyar
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/EBImage | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/EBImage.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '2.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex using pdflatex ... OK
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.2.5
* found ImageMagick includes in -I/usr/include
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c display.c -o display.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_floodfill.cpp -o filters_floodfill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c frameDist.c -o frameDist.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -I/usr/local/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/X11R6/include -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/cairo -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fstack-protector -Wall -pthread -I/usr/include -fpic -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib64 -o EBImage.so colors.o conversions.o display.o drawable.o EBImage.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_floodfill.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o frameDist.o io.o objects.o tools.o -L/usr/local/lib -L/opt/gnome/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -lfreetype -lz -L/usr/lib -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
EBImage-deprecated text html latex
EBImage-package text html latex
Image.generic.methods text html latex
channel text html latex example
class.Image text html latex example
class.IndexedImage text html latex example
constructors text html latex example
denoising text html latex example
display text html latex example
distmap text html latex example
drawable text html latex example
enhancing text html latex
features-edge text html latex example
features-haralick text html latex example
features-hull text html latex example
features-moments text html latex example
features-zernike text html latex example
filter2 text html latex
floodfill text html latex example
frameDist text html latex
getFeatures text html latex example
input-output text html latex example
internals text html latex
matchObjects text html latex
morphology text html latex example
normalize text html latex example
paintObjects text html latex example
propagate text html latex example
rmObjects text html latex example
segmenting text html latex
stackObjects text html latex example
thresholding text html latex example
tile text html latex example
transformations text html latex
watershed text html latex example
** building package indices ...
* DONE (EBImage)