rsbml 1.6.0
Michael Lawrence
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/rsbml | | Last Changed Rev: 31890 / Revision: 33132 | | Last Changed Date: 2008-05-22 13:47:31 -0700 (Thu, 22 May 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/rsbml.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'rsbml/DESCRIPTION' ... OK
* this is package 'rsbml' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rsbml' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating rsbml-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rsbml-manual.tex ... OK
* checking rsbml-manual.tex using pdflatex ... OK
* Installing *source* package 'rsbml' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML3... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c StringMap.c -o StringMap.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c check.c -o check.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c doc.c -o doc.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c dom.c -o dom.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c graph.c -o graph.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c init.c -o init.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/include/libxml2 -DLIBSBML3 -msse3 -fPIC -g -O2 -march=nocona -c io.c -o io.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o -L/usr/local/lib -lsbml -lstdc++ -lxml2 -lpthread -lz -liconv -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
Loading required package: graph
** help
>>> Building/Updating help pages for package 'rsbml'
Formats: text html latex example
AlgebraicRule-class text html latex
AssignmentRule-class text html latex
BoundingBox-class text html latex
CVTerm-class text html latex
Compartment-class text html latex
CompartmentGlyph-class text html latex
CompartmentType-class text html latex
CompartmentVolumeRule-class text html latex
Constraint-class text html latex
CubicBezier-class text html latex
Curve-class text html latex
Delay-class text html latex
Dimensions-class text html latex
Event-class text html latex
EventAssignment-class text html latex
FunctionDefinition-class text html latex
GraphicalObject-class text html latex
InitialAssignment-class text html latex
KineticLaw-class text html latex
Layout-class text html latex
LineSegment-class text html latex
Model-class text html latex
ModelCreator-class text html latex
ModelHistory-class text html latex
ModifierSpeciesReference-class text html latex
Parameter-class text html latex
ParameterRule-class text html latex
Point-class text html latex
RateRule-class text html latex
Reaction-class text html latex
ReactionGlyph-class text html latex
Rule-class text html latex
SBML-class text html latex example
SBMLDocument-class text html latex example
SBase-class text html latex
SimpleSpeciesReference-class text html latex
Species-class text html latex
SpeciesConcentrationRule-class text html latex
SpeciesGlyph-class text html latex
SpeciesReference-class text html latex
SpeciesReferenceGlyph-class text html latex
SpeciesType-class text html latex
StoichiometryMath-class text html latex
TextGlyph-class text html latex
Trigger-class text html latex
Unit-class text html latex
UnitDefinition-class text html latex
read text html latex example
** building package indices ...
* DONE (rsbml)