biomaRt 1.14.0
Steffen Durinck
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biomaRt | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for file 'biomaRt/DESCRIPTION' ... OK
* preparing 'biomaRt':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst407666598
---------- Making package biomaRt ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package biomaRt for lazy loading
Loading required package: RCurl
installing man source files
installing indices
installing help
Note: removing empty section \seealso
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'biomaRt'
Formats: text html latex example chm
Mart-class text html latex chm
attributeSummary text html latex example chm
exportFASTA text html latex example chm
filterOptions text html latex example chm
filterSummary text html latex example chm
filterType text html latex example chm
getAffyArrays text html latex example chm
getBM text html latex example chm
getGO text html latex example chm
getGene text html latex example chm
getHomolog text html latex example chm
getLDS text html latex example chm
getSNP text html latex example chm
getSequence text html latex example chm
listAttributes text html latex example chm
listDatasets text html latex example chm
listFilters text html latex example chm
listMarts text html latex example chm
martDisconnect text html latex example chm
parseAttributes text html latex chm
parseFilters text html latex chm
useDataset text html latex example chm
useMart text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\biomaRt\chm\biomaRt.chm
Compile time: 0 minutes, 0 seconds
24 Topics
47 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\biomaRt\chm\biomaRt.chm, 34,658 bytes
Compression decreased file by 29,385 bytes.
adding MD5 sums
* DONE (biomaRt)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: RCurl
Attaching package: 'biomaRt'
The following object(s) are masked from package:annotate :
getGO
Error: processing vignette 'biomaRt.Rnw' failed with diagnostics:
chunk 11
Error in getBM(attributes = c("entrezgene", "go", "go_description", "evidence_code"), :
Invalid attribute(s): go, go_description, evidence_code
Please use the function 'listAttributes' to get valid attribute names
Execution halted