biomaRt 1.14.0
Steffen Durinck
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/biomaRt | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | [ ERROR ] | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for file 'biomaRt/DESCRIPTION' ... OK
* preparing 'biomaRt':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'biomaRt' ...
** R
** inst
** preparing package for lazy loading
Loading required package: RCurl
** help
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'biomaRt'
Formats: text html latex example
Mart-class text html latex
attributeSummary text html latex example
exportFASTA text html latex example
filterOptions text html latex example
filterSummary text html latex example
filterType text html latex example
getAffyArrays text html latex example
getBM text html latex example
getGO text html latex example
getGene text html latex example
getHomolog text html latex example
getLDS text html latex example
getSNP text html latex example
getSequence text html latex example
listAttributes text html latex example
listDatasets text html latex example
listFilters text html latex example
listMarts text html latex example
martDisconnect text html latex example
parseAttributes text html latex
parseFilters text html latex
useDataset text html latex example
useMart text html latex example
** building package indices ...
* DONE (biomaRt)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: RCurl
Attaching package: 'biomaRt'
The following object(s) are masked from package:annotate :
getGO
Error: processing vignette 'biomaRt.Rnw' failed with diagnostics:
chunk 11
Error in getBM(attributes = c("entrezgene", "go", "go_description", "evidence_code"), :
Invalid attribute(s): go, go_description, evidence_code
Please use the function 'listAttributes' to get valid attribute names
Execution halted