* checking for file 'XDE/DESCRIPTION' ... OK
* preparing 'XDE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'XDE' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:18: warning: comparison between signed and unsigned integer expressions
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:17:1: warning: "PI" redefined
In file included from /home/biocbuild/bbs-2.2-bioc/R/include/R.h:44,
from diffExpressed_main.cpp:1:
/home/biocbuild/bbs-2.2-bioc/R/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c main.cpp -o main.o
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:160: warning: comparison between signed and unsigned integer expressions
main.cpp:370: warning: comparison between signed and unsigned integer expressions
main.cpp:384: warning: comparison between signed and unsigned integer expressions
main.cpp:389: warning: comparison between signed and unsigned integer expressions
main.cpp:392: warning: comparison between signed and unsigned integer expressions
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Random.cpp -o Random.o
Random.cpp: In constructor 'Random::Random(unsigned int)':
Random.cpp:11: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::Unif01()':
Random.cpp:49: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:144: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:421: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:495: warning: comparison between signed and unsigned integer expressions
Random.cpp:498: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:904: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:929: warning: unused variable 'x'
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Structure.cpp -o Structure.o
In file included from /usr/include/c++/4.1.0/backward/strstream:51,
from Structure.cpp:1:
/usr/include/c++/4.1.0/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1095: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1099: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1102: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1114: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1118: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1121: warning: comparison between signed and unsigned integer expressions
g++ -shared -L/usr/local/lib64 -o XDE.so Cholesky.o diffExpressed_main.o main.o Matrix.o Random.o Structure.o -lm
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "pairs" in "XDE"
Creating a new generic function for "nrow" in "XDE"
Creating a new generic function for "plot" in "XDE"
** help
Note: removing empty section \details
Note: removing empty section \examples
>>> Building/Updating help pages for package 'XDE'
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** building package indices ...
* DONE (XDE)
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* cleaning src
* removing junk files
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* checking for empty or unneeded directories
* building 'XDE_1.0.0.tar.gz'