Package: GSEAlm

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check GSEAlm_1.0.0.tar.gz

StartedAt: 2008-08-08 04:57:23 -0700 (Fri, 08 Aug 2008)

EndedAt: 2008-08-08 05:02:31 -0700 (Fri, 08 Aug 2008)

EllapsedTime: 308.8 seconds

RetCode: 0

Status: OK

CheckDir: GSEAlm.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/GSEAlm.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'GSEAlm/DESCRIPTION' ... OK
* this is package 'GSEAlm' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GSEAlm' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GSEAlm-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GSEAlm-manual.tex ... OK
* checking GSEAlm-manual.tex using pdflatex ... OK

* Installing *source* package 'GSEAlm' ...
** R
** inst
** help
Note: removing empty section \references
 >>> Building/Updating help pages for package 'GSEAlm'
     Formats: text html latex example 
  GSNormalize                       text    html    latex   example
  dfbetasPerGene                    text    html    latex   example
  getResidPerGene                   text    html    latex   example
  gsealmPerm                        text    html    latex   example
  lmPerGene                         text    html    latex   example
  resplot                           text    html    latex   example
** building package indices ...
* DONE (GSEAlm)