xcms 1.11.16
Colin A. Smith
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms | | Last Changed Rev: 30928 / Revision: 30951 | | Last Changed Date: 2008-04-08 12:41:03 -0700 (Tue, 08 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | ERROR | OK |
* checking for file 'xcms/DESCRIPTION' ... OK
* preparing 'xcms':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst34476519
---------- Making package xcms ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making base64.d from base64.c
making mzClust_hclust.d from mzClust_hclust.c
making mzboxes.d from mzboxes.c
making netCDF.d from netCDF.c
making ramp.d from ramp.c
making rampR.d from rampR.c
making util.d from util.c
making xcms.d from xcms.c
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c base64.c -o base64.o
base64.c:18: warning: 'encode_group' defined but not used
base64.c:46: warning: 'decode_group' defined but not used
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mzClust_hclust.c -o mzClust_hclust.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mzboxes.c -o mzboxes.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c netCDF.c -o netCDF.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ramp.c -o ramp.o
ramp.c: In function 'readPeaks':
ramp.c:1545: warning: 'deltaMass' may be used uninitialized in this function
ramp.c:1546: warning: 'multiplier' may be used uninitialized in this function
ramp.c:1544: warning: 'lastMass' may be used uninitialized in this function
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c rampR.c -o rampR.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
gcc -std=gnu99 -I./win -D_MSC_VER -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c xcms.c -o xcms.o
xcms.c: In function 'ProfBinLin':
xcms.c:11: warning: 'ypre' may be used uninitialized in this function
xcms.c:11: warning: 'xpre' may be used uninitialized in this function
xcms.c: In function 'ProfBinLinBase':
xcms.c:62: warning: 'ipre' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i xcms_res.rc -o xcms_res.o
gcc -std=gnu99 -shared -s -o xcms.dll xcms.def base64.o mzClust_hclust.o mzboxes.o netCDF.o ramp.o rampR.o util.o xcms.o xcms_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -L./win -lws2_32 -lnetcdf -lRzlib -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package xcms for lazy loading
Warning in namespaceImportFrom(ns, loadNamespace(i[[1]], c(lib.loc, .libPaths())), :
replacing previous import: plot
installing man source files
installing indices
installing help
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: removing empty section \description
Note: removing empty section \description
Note: removing empty section \description
Note: removing empty section \description
>>> Building/Updating help pages for package 'xcms'
Formats: text html latex example chm
SSgauss text html latex chm
c.xcmsSet text html latex chm
colMax text html latex chm
collect-methods text html latex chm
descendZero text html latex example chm
diffreport-methods text html latex chm
dispName-methods text html latex chm
doubleMatrix text html latex chm
etg text html latex chm
explore-methods text html latex chm
fillPeaks-methods text html latex chm
filtfft text html latex chm
findEqualGreater text html latex chm
findMZBoxes-methods text html latex chm
findPeaks-methods text html latex chm
findPeaks.MS1-methods text html latex chm
findPeaks.MSW-methods text html latex chm
findPeaks.centWave-methods text html latex chm
findPeaks.matchedFilter-methods text html latex chm
findProtocols-methods text html latex chm
getEIC-methods text html latex chm
getPeaks-methods text html latex chm
getScan-methods text html latex chm
getSpec-methods text html latex chm
group-methods text html latex chm
group.mzClust text html latex example chm
groupnames-methods text html latex chm
groupval-methods text html latex chm
image.xcmsRaw text html latex chm
inType-methods text html latex chm
medianFilter text html latex example chm
na.flatfill text html latex chm
netCDF text html latex chm
outType-methods text html latex chm
panel.cor text html latex chm
perform-methods text html latex chm
pipeline-methods text html latex chm
plot.xcmsEIC text html latex chm
plotChrom-methods text html latex chm
plotPeaks-methods text html latex chm
plotRaw-methods text html latex chm
plotScan-methods text html latex chm
plotSpec-methods text html latex chm
plotSurf-methods text html latex chm
plotTIC-methods text html latex chm
plotrt-methods text html latex chm
profGenerate text html latex chm
profMedFilt-methods text html latex chm
profMethod-methods text html latex chm
profRange-methods text html latex chm
profStep-methods text html latex chm
protocol-methods text html latex chm
pval text html latex chm
ramp text html latex chm
rawEIC-methods text html lateNote: removing empty section \note
Note: removing empty section \note
x chm
rawMat-methods text html latex chm
rectUnique text html latex example chm
retcor-methods text html latex chm
retexp text html latex chm
sampnames-methods text html latex chm
setProtocol text html latex example chm
setStage text html latex chm
missing link(s): defaultMethod
specNoise text html latex chm
specPeaks text html latex chm
split.xcmsSet text html latex chm
widget-methods text html latex chm
xcmsData-class text html latex chm
xcmsEIC-class text html latex chm
xcmsFragments-class text html latex chm
xcmsFragments text html latex chm
xcmsPeaks-class text html latex chm
xcmsPipeline-class text html latex chm
xcmsPipelineProfile-class text html latex chm
xcmsProfile-class text html latex chm
missing link(s): profileMatrix
xcmsProtocol-class text html latex chm
xcmsProtocol text html latex example chm
xcmsRaw-class text html latex chm
xcmsRaw text html latex chm
missing link(s): profileMatrix genProfile genProfile
xcmsSet-class text html latex chm
xcmsSet text html latex chm
missing link(s): processRaws
xcmsStage-class text html latex chm
missing link(s): defaultMethod defaultMethod<-
xcmsStage text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\xcms\chm\xcms.chm
Compile time: 0 minutes, 1 second
83 Topics
492 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\xcms\chm\xcms.chm, 111,831 bytes
Compression decreased file by 204,468 bytes.
adding MD5 sums
* DONE (xcms)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'xcms_1.11.16.tar.gz'