rhdf5 1.7.1
Biocore Team c/o BioC user list
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rhdf5 | | Last Changed Rev: 30639 / Revision: 30951 | | Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'rhdf5/DESCRIPTION' ... OK
* preparing 'rhdf5':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst482042443
---------- Making package rhdf5 ------------
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
adding build stamp to DESCRIPTION
making DLL ...
making hdf5.d from hdf5.c
making hdf_attribs.d from hdf_attribs.c
making hdf_convert.d from hdf_convert.c
making hdf_dataset.d from hdf_dataset.c
making hdf_dataspace.d from hdf_dataspace.c
making hdf_datatype.d from hdf_datatype.c
making hdf_files.d from hdf_files.c
making hdf_group.d from hdf_group.c
making hdf_group_apply.d from hdf_group_apply.c
making hdf_initializer.d from hdf_initializer.c
making hdf_io.d from hdf_io.c
making hdf_plist.d from hdf_plist.c
making hdf_register.d from hdf_register.c
making hdf_subassign.d from hdf_subassign.c
making hdf_util.d from hdf_util.c
gcc -std=gnu99 -IC:/hdf/5-142p1-win/include -D_HDF5USEDLL_ -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c hdf5.c -o hdf5.o
In file included from hdf5.c:1:
common.h:7:18: error: hdf5.h: No such file or directory
In file included from hdf5.c:1:
common.h:46: error: expected ')' before 'const'
common.h:47: error: expected declaration specifiers or '...' before 'hsize_t'
common.h:132: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'HDF_fileopen'
common.h:133: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'HDF_groupmkgroup'
common.h:134: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'double2int'
common.h:137: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'HDF_copydataset'
common.h:139: warning: parameter names (without types) in function declaration
common.h:140: error: expected ')' before 'int'
common.h:142: warning: parameter names (without types) in function declaration
common.h:143: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'Rtype2HDFtype'
hdf5.c: In function 'HDF_init':
hdf5.c:23: error: 'hid_t' undeclared (first use in this function)
hdf5.c:23: error: (Each undeclared identifier is reported only once
hdf5.c:23: error: for each function it appears in.)
hdf5.c:23: error: expected ';' before 'file'
hdf5.c:39: error: 'file' undeclared (first use in this function)
hdf5.c:39: warning: implicit declaration of function 'HDF_fileopen'
hdf5.c:39: error: 'H5P_DEFAULT' undeclared (first use in this function)
hdf5.c:40: warning: implicit declaration of function 'H5sexp'
hdf5.c:40: warning: assignment makes pointer from integer without a cast
hdf5.c:55: error: 'group' undeclared (first use in this function)
hdf5.c:55: warning: implicit declaration of function 'HDF_groupmkgroup'
hdf5.c:56: warning: assignment makes pointer from integer without a cast
hdf5.c: In function 'HDF_is_valid':
hdf5.c:68: error: 'hid_t' undeclared (first use in this function)
hdf5.c:68: error: expected ')' before 'R_ExternalPtrAddr'
make[3]: *** [hdf5.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-rhdf5] Error 2
*** Installation of rhdf5 failed ***
Removing 'E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst482042443/rhdf5'
* creating vignettes ... ERROR
Error: processing vignette 'rhdf5.Rnw' failed with diagnostics:
chunk 1 (label=loadlib)
Error in library(rhdf5) : there is no package called 'rhdf5'
Execution halted