quantsmooth 1.5.4
Jan Oosting
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/quantsmooth | | Last Changed Rev: 30914 / Revision: 30951 | | Last Changed Date: 2008-04-08 08:24:36 -0700 (Tue, 08 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/quantsmooth.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ASCII
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.5.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
grid
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable 'chrom.bands'
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
position2Cytoband: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
grid.chromosome position2Cytoband
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating quantsmooth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating quantsmooth-manual.tex ... OK
* checking quantsmooth-manual.tex using pdflatex ... OK
WARNING: There were 2 warnings, see
/Users/biocbuild/bbs-2.2-bioc/meat/quantsmooth.Rcheck/00check.log
for details
* Installing *source* package 'quantsmooth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.77) loaded. To cite, see citation("SparseM")
Loading required package: lodplot
Loading required package: grid
** help
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'quantsmooth'
Formats: text html latex example
Chromosome14 text html latex
drawSimpleChrom text html latex example
getChangedIdx text html latex
getChangedRegions text html latex example
getLambdaMin text html latex example
lengthChromosome text html latex example
numericCHR text html latex example
paintCytobands text html latex example
plotChromosome text html latex
plotSmoothed text html latex example
prepareGenomePlot text html latex
quantsmooth text html latex example
quantsmooth.cv text html latex example
quantsmooth.seg text html latex example
scaleto text html latex
** building package indices ...
* DONE (quantsmooth)