Package: impute

Version: 1.11.0

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check impute_1.11.0.tar.gz

StartedAt: 2008-04-09 05:08:00 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 05:08:12 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 11.5 seconds

RetCode: 0

Status: OK

CheckDir: impute.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/impute.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'impute/DESCRIPTION' ... OK
* this is package 'impute' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'impute' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating impute-Ex.R ... OK
* checking examples ... OK
* creating impute-manual.tex ... OK
* checking impute-manual.tex using pdflatex ... OK

* Installing *source* package 'impute' ...
** libs
gfortran   -fpic  -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o impute.so knnimpute.o  -lgfortran -lm -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** help
Note: removing empty section \details
 >>> Building/Updating help pages for package 'impute'
     Formats: text html latex example 
  impute.knn                        text    html    latex   example
  khanmiss                          text    html    latex   example
** building package indices ...
* DONE (impute)