gaga 0.0.1
David Rossell
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga | | Last Changed Rev: 30639 / Revision: 30951 | | Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for file 'gaga/DESCRIPTION' ... OK
* preparing 'gaga':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst307223385
---------- Making package gaga ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making cseqdesma.d from cseqdesma.c
making cstat.d from cstat.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i gaga_res.rc -o gaga_res.o
gcc -std=gnu99 -shared -s -o gaga.dll gaga.def cseqdesma.o cstat.o gaga_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example chm
checkfit text html latex chm
classpred text html latex example chm
dcgamma text html latex chm
findgenes text html latex example chm
fit.gg text html latex example chm
getpar text html latex chm
parest text html latex example chm
powclasspred text html latex chm
print.gagafit text html latex chm
sim.gg text html latex example chm
simnewsamples text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\gaga\chm\gaga.chm
Compile time: 0 minutes, 1 second
12 Topics
47 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\gaga\chm\gaga.chm, 34,333 bytes
Compression decreased file by 22,020 bytes.
adding MD5 sums
* DONE (gaga)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'gaga_0.0.1.tar.gz'