flowUtils 0.99.1
Florian Hahne
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowUtils | | Last Changed Rev: 30941 / Revision: 30951 | | Last Changed Date: 2008-04-08 18:13:19 -0700 (Tue, 08 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/flowUtils.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in paste(normalizePath(file.path(libname, pkgname, "libs")), file.path(Sys.getenv("R_HOME"), :
could not find function "normalizePath"
Error: .onLoad failed in 'loadNamespace' for 'XML'
Execution halted
A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
parse.gatingML.http...www.isac.net.org.std.Gating.ML.v1.3._Gating.ML :
makeCall: possible error in as.symbol("&", LESS, LT): unused
argument(s) (LESS, LT)
parse.gatingML.http...www.isac.net.org.std.Gating.ML.v1.3._Gating.ML :
makeCall: possible error in as.call(as.symbol("&"), MORE, GTE):
unused argument(s) (MORE, GTE)
xmlToClass : <anonymous>: no visible binding for global variable
'params'
xmlToFUN : <anonymous>: no visible binding for global variable 'params'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowUtils-Ex.R ... OK
* checking examples ... OK
* creating flowUtils-manual.tex ... OK
* checking flowUtils-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/flowUtils.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/flowUtils.Rcheck
---------- Making package flowUtils ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'flowUtils'
Formats: text html latex example chm
flowUtil-package text html latex example chm
read.compensationML text html latex example chm
read.gatingML text html latex example chm
read.transformML text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\flowUtils.Rcheck\00_pkg_src\flowUtils\chm\flowUtils.chm
Compile time: 0 minutes, 0 seconds
5 Topics
10 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\flowUtils.Rcheck\00_pkg_src\flowUtils\chm\flowUtils.chm, 19,582 bytes
Compression increased file by 2,359 bytes.
adding MD5 sums
* DONE (flowUtils)