flowQ 0.99.1
N. Le Meur
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ | | Last Changed Rev: 30942 / Revision: 30951 | | Last Changed Date: 2008-04-08 18:13:53 -0700 (Tue, 08 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowQ-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Invalid Parameter - 480x480
Invalid Parameter - /test.jpg
Invalid Parameter - 480x480
checkVignettes(dir = 'E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck', workdir='src')
* creating flowQ-manual.tex ... OK
* checking flowQ-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/flowQ.Rcheck
---------- Making package flowQ ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package flowQ for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Attaching package: 'rrcov'
The following object(s) are masked from package:stats :
biplot,
predict,
screeplot
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl
Attaching package: 'flowCore'
The following object(s) are masked from package:Biobase :
description
The following object(s) are masked from package:stats :
filter
Loading required package: outliers
Loading required package: flowViz
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
Loading required package: MASS
Loading required package: RColorBrewer
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'flowQ'
Formats: text html latex example chm
aggregatorList-class text html latex example chm
binaryAggregator-class text html latex example chm
discreteAggregator-class text html latex example chm
evaluateProcess text html latex example chm
factorAggregator-class text html latex example chm
flowQ-package text html latex example chm
numericAggregator-class text html latex example chm
outlier-class text html latex example chm
outlierResult-class text html latex example chm
outliers-methods text html latex chm
qaAggregator-class text html latex example chm
qaGraph-class text html latex example chm
qaGraphList-class text html latex example chm
qaProcess-class text html latex example chm
qaProcess.marginevents text html latex example chm
qaProcess.timeline text html latex example chm
qaProcessFrame-class text html latex example chm
qaReport text html latex example chm
rangeAggregator-class text html latex example chm
stringAggregator-class text html latex example chm
validProcess text html latex chm
writeQAReport text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\flowQ.Rcheck\00_pkg_src\flowQ\chm\flowQ.chm
Compile time: 0 minutes, 0 seconds
23 Topics
230 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\flowQ.Rcheck\00_pkg_src\flowQ\chm\flowQ.chm, 37,526 bytes
Compression decreased file by 52,211 bytes.
adding MD5 sums
* DONE (flowQ)