Rredland 1.5.1
VJ Carey
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rredland | | Last Changed Rev: 25301 / Revision: 30951 | | Last Changed Date: 2007-06-10 10:22:32 -0700 (Sun, 10 Jun 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL Rredland_1.5.1.tar.gz'
* Installing to library 'Rredland.buildbin-libdir'
* Installing *source* package 'Rredland' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c Rredl.c -o Rredl.o
Rredl.c: In function 'get_rdfnode_ref':
Rredl.c:325: warning: 'node' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
** help
Note: removing empty section \value
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'Rredland'
Formats: text html latex example
cleanXSDT text html latex
getProperties text html latex example
gordb text html latex example
makeRedlURI text html latex example
readRDF text html latex example
redlModel-class text html latex example
redlWorld-class text html latex example
** building package indices ...
* DONE (Rredland)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --libs-only Rredland_1.5.1.tar.gz'
* Installing to library 'Rredland.buildbin-libdir'
* Installing *source* package 'Rredland' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -Wall -c Rredl.c -o Rredl.o
Rredl.c: In function 'get_rdfnode_ref':
Rredl.c:325: warning: 'node' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
ld: warning in /usr/local/lib/librdf.dylib, file is not of required architecture
ld: warning in /usr/local/lib/librasqal.dylib, file is not of required architecture
ld: warning in /usr/local/lib/libraptor.dylib, file is not of required architecture
* DONE (Rredland)
INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --libs-only Rredland_1.5.1.tar.gz'
* Installing to library 'Rredland.buildbin-libdir'
* Installing *source* package 'Rredland' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -Wall -c Rredl.c -o Rredl.o
Rredl.c: In function 'get_rdfnode_ref':
Rredl.c:325: warning: 'node' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning in /usr/local/lib/librdf.dylib, file is not of required architecture
ld: warning in /usr/local/lib/librasqal.dylib, file is not of required architecture
ld: warning in /usr/local/lib/libraptor.dylib, file is not of required architecture
* DONE (Rredland)