GenomeGraphs 0.99.1
Steffen Durinck
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs | | Last Changed Rev: 30849 / Revision: 30951 | | Last Changed Date: 2008-04-04 12:23:11 -0700 (Fri, 04 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | [ ERROR ] | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* preparing 'GenomeGraphs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
** help
Note: removing empty section \references
>>> Building/Updating help pages for package 'GenomeGraphs'
Formats: text html latex example
BaseTrack-class text html latex example
DisplayPars-class text html latex example
DisplayPars text html latex example
ExonArray-class text html latex example
Gene-class text html latex example
GeneModel-class text html latex example
GeneRegion-class text html latex example
GenericArray-class text html latex example
GenomeAxis-class text html latex example
HighlightRegion-class text html latex example
Ideogram-class text html latex example
Legend-class text html latex example
MappedRead-class text html latex example
Segmentation-class text html latex example
Title-class text html latex example
Transcript-class text html latex example
TranscriptRegion-class text html latex example
cn text html latex example
exonProbePos text html latex example
gdObject-class text html latex example
gdPlot text html latex example
getPar text html latex example
ideogramTab text html latex example
intensity text html latex example
probestart text html latex example
segEnd text html latex example
segStart text html latex example
segments text html latex example
setPar text html latex example
unrData text html latex example
unrNProbes text html latex example
unrPositions text html latex example
yeastCons1 text html latex example
** building package indices ...
* DONE (GenomeGraphs)
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
V1
1 Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_49: DBI connect('database=ensembl_mart_49;host=martdb.ensembl.org;port=5316','anonymous',...) failed: Too many connections at /ebi/www/biomart/www/biomart-perl-06/lib/BioMart/Configuration/DBLocation.pm line 98
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", :
Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report.
Error: processing vignette 'GenomeGraphs.Rnw' failed with diagnostics:
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", :
Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report.
Execution halted