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Package 69/264HostnameOS / ArchBUILDCHECKBUILD BIN
EBImage 2.3.17
Oleg Sklyar
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EBImage
Last Changed Rev: 30688 / Revision: 30951
Last Changed Date: 2008-03-26 13:46:32 -0700 (Wed, 26 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: EBImage
Version: 2.3.17
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check EBImage_2.3.17.tar.gz
StartedAt: 2008-04-09 07:18:05 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 07:25:31 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 446.1 seconds
RetCode: 0
Status: OK
CheckDir: EBImage.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/EBImage.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '2.3.17'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex using pdflatex ... OK

EBImage.Rcheck/00install.out:

* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.5 Q16 
* found ImageMagick includes in -I/usr/include
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c display.c -o display.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from display.c:24:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from display.c:24:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
display.c: In function 'onWinDestroy':
display.c:271: warning: unused parameter 'wnd'
display.c:271: warning: unused parameter 'event'
display.c: In function 'onZoomInPress':
display.c:286: warning: unused parameter 'btn'
display.c: In function 'onZoomOutPress':
display.c:316: warning: unused parameter 'btn'
display.c: In function 'onZoomOnePress':
display.c:346: warning: unused parameter 'btn'
display.c: In function 'onNextImPress':
display.c:371: warning: unused parameter 'btn'
display.c: In function 'onPrevImPress':
display.c:405: warning: unused parameter 'btn'
display.c: In function 'onMouseMove':
display.c:440: warning: unused parameter 'widget'
display.c:440: warning: unused parameter 'event'
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c EBImage.c -o EBImage.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from EBImage.c:41:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from EBImage.c:41:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
EBImage.c: In function '_doIter':
EBImage.c:95: warning: unused parameter 'userData'
EBImage.c: In function 'R_unload_EBImage':
EBImage.c:142: warning: unused parameter 'winDll'
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_floodfill.cpp -o filters_floodfill.o
filters_floodfill.cpp: In instantiation of 'void fillAroundObjectHullT(T**, T**, const XYPoint&, const Box&, int&) [with T = int]':
filters_floodfill.cpp:406:   instantiated from 'void fillHullT(T*, const XYPoint&) [with T = int]'
filters_floodfill.cpp:74:   instantiated from here
filters_floodfill.cpp:237: warning: unused parameter 'size'
filters_floodfill.cpp: In instantiation of 'void fillAroundObjectHullT(T**, T**, const XYPoint&, const Box&, int&) [with T = double]':
filters_floodfill.cpp:406:   instantiated from 'void fillHullT(T*, const XYPoint&) [with T = double]'
filters_floodfill.cpp:78:   instantiated from here
filters_floodfill.cpp:237: warning: unused parameter 'size'
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c frameDist.c -o frameDist.o
frameDist.c:27: warning: C99 inline functions are not supported; using GNU89
frameDist.c:27: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
frameDist.c:119: warning: C99 inline functions are not supported; using GNU89
frameDist.c:130: warning: C99 inline functions are not supported; using GNU89
frameDist.c:169: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c io.c -o io.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
                 from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from io.c:17:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
                 from /usr/include/glib-2.0/glib.h:32,
                 from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
                 from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
                 from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
                 from /usr/include/gtk-2.0/gdk/gdk.h:30,
                 from /usr/include/gtk-2.0/gtk/gtk.h:31,
                 from io.c:17:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include   -DUSE_GTK -DGLIB_GETTEXT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12   -Wall -O2 -march=i586 -mtune=i686 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include  -fpic  -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib -o EBImage.so colors.o conversions.o display.o drawable.o EBImage.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_floodfill.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o frameDist.o io.o objects.o tools.o -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0   -L/usr/lib -L/usr/lib -lfreetype -lz -lMagick -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lWand -lMagick -lWand     -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'EBImage'
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  EBImage-deprecated                text    html    latex
  EBImage-package                   text    html    latex
  Image.generic.methods             text    html    latex
  channel                           text    html    latex   example
  class.Image                       text    html    latex   example
  class.IndexedImage                text    html    latex   example
  constructors                      text    html    latex   example
  denoising                         text    html    latex   example
  display                           text    html    latex   example
  distmap                           text    html    latex   example
  drawable                          text    html    latex   example
  enhancing                         text    html    latex
  features-edge                     text    html    latex   example
  features-haralick                 text    html    latex   example
  features-hull                     text    html    latex   example
  features-moments                  text    html    latex   example
  features-zernike                  text    html    latex   example
  filter2                           text    html    latex
  floodfill                         text    html    latex   example
  frameDist                         text    html    latex
  getFeatures                       text    html    latex   example
  input-output                      text    html    latex   example
  internals                         text    html    latex
  matchObjects                      text    html    latex
  morphology                        text    html    latex   example
  normalize                         text    html    latex   example
  paintObjects                      text    html    latex   example
  propagate                         text    html    latex   example
  rmObjects                         text    html    latex   example
  segmenting                        text    html    latex
  stackObjects                      text    html    latex   example
  thresholding                      text    html    latex   example
  tile                              text    html    latex   example
  transformations                   text    html    latex
  watershed                         text    html    latex   example
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