yaqcaffy 0.99.1
Laurent Gatto
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/yaqcaffy | | Last Changed Rev: 28077 / Revision: 29143 | | Last Changed Date: 2007-10-19 06:58:49 -0700 (Fri, 19 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/yaqcaffy.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'yaqcaffy/DESCRIPTION' ... OK
* this is package 'yaqcaffy' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yaqcaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating yaqcaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './yaqcaffy.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './yaqcaffy.tex' ...
* creating yaqcaffy-manual.tex ... OK
* checking yaqcaffy-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/yaqcaffy.Rcheck
* Installing *source* package 'yaqcaffy' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: simpleaffy
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "merge" in "yaqcaffy"
** help
>>> Building/Updating help pages for package 'yaqcaffy'
Formats: text html latex example
YAQCStats-accessor text html latex
YAQCStats-class text html latex
getAllInt text html latex example
getBioProbes text html latex example
getOutliers text html latex example
getQCRatios text html latex example
getRatioProbes text html latex example
getSpikeProbes text html latex example
morespikes text html latex
reprodPlot text html latex example
yaqc-methods text html latex
yaqc.affy text html latex example
yaqc.plot text html latex example
** building package indices ...
* DONE (yaqcaffy)