rsbml 1.5.0
Michael Lawrence
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rsbml | | Last Changed Rev: 28215 / Revision: 29143 | | Last Changed Date: 2007-10-24 23:39:53 -0700 (Wed, 24 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/rsbml.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'rsbml/DESCRIPTION' ... OK
* this is package 'rsbml' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rsbml' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files without 'description':
Species-class.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating rsbml-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rsbml-manual.tex ... OK
* checking rsbml-manual.tex ... OK
WARNING: There was 1 warning, see
D:/biocbld/bbs-2.2-bioc/meat/rsbml.Rcheck/00check.log
for details
installing R.css in D:/biocbld/bbs-2.2-bioc/meat/rsbml.Rcheck
---------- Making package rsbml ------------
adding build stamp to DESCRIPTION
making DLL ...
making check.d from check.c
making doc.d from doc.c
making dom.d from dom.c
making graph.d from graph.c
making init.d from init.c
making io.d from io.c
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c check.c -o check.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from check.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c doc.c -o doc.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from doc.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c dom.c -o dom.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from dom.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c graph.c -o graph.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from graph.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c init.c -o init.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from init.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Id:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c io.c -o io.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from io.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include -i rsbml_res.rc -o rsbml_res.o
gcc -std=gnu99 -shared -s -o rsbml.dll rsbml.def check.o doc.o dom.o graph.o init.o io.o rsbml_res.o -Ld:/biocbld/bbs-2.2-bioc/R/bin -LC:/SBML/libsbml-2.3.4-expat/win32/bin -lsbml -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package rsbml for lazy loading
Loading required package: graph
New generic for "curve" does not agree with implicit generic from package "graphics"; a new generic will be assigned with package "rsbml"
New generic for "delay" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
New generic for "scale" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
installing man source files
installing indices
installing help
Note: removing empty section \description
Note: removing empty section \description
>>> Building/Updating help pages for package 'rsbml'
Formats: text html latex example chm
AlgebraicRule-class text html latex chm
AssignmentRule-class text html latex chm
BoundingBox-class text html latex chm
Compartment-class text html latex chm
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Delay-class text html latex chm
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read text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\rsbml.Rcheck\00_pkg_src\rsbml\chm\rsbml.chm
Compile time: 0 minutes, 0 seconds
46 Topics
618 Local links
44 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\rsbml.Rcheck\00_pkg_src\rsbml\chm\rsbml.chm, 60,034 bytes
Compression decreased file by 254,707 bytes.
adding MD5 sums
* DONE (rsbml)