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Package 74/251HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.5.7
Nolwenn Le Meur
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowCore
Last Changed Rev: 29112 / Revision: 29143
Last Changed Date: 2007-12-08 23:02:01 -0800 (Sat, 08 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  WARNINGS [ OK ]
Package: flowCore
Version: 1.5.7
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=flowCore.buildbin-libdir flowCore_1.5.7.tar.gz
StartedAt: 2007-12-11 08:57:23 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 08:58:26 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 63.1 seconds
RetCode: 0
Status: OK
PackageFile: flowCore_1.5.7.zip
PackageFileSize: 9.985 MiB

Command output

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/flowCore.buildbin-libdir

Using auto-selected zip options 'flowCore-ZIPDATA=zip flowCore-HELP=ziponly'

---------- Making package flowCore ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making biexponential.d from biexponential.c
making inPolygon.d from inPolygon.c
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c biexponential.c -o biexponential.o
gcc  -std=gnu99  -ID:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c inPolygon.c -o inPolygon.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.2-bioc/R/include  -i flowCore_res.rc -o flowCore_res.o
gcc  -std=gnu99  -shared -s  -o flowCore.dll flowCore.def biexponential.o inPolygon.o flowCore_res.o  -LD:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package flowCore for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl
Warning: argument in method definition changed from (e1) to (x)
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
  installing man source files
  installing indices
  zipping data
  installing help
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \description
Note: removing empty section \description
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example chm 
  GvHD                              text    html    latex           chm
  KmeansFilter                      text    html    latex   example chm
  Subset-methods                    text    html    latex   example chm
  arcsinhTransform                  text    html    latex   example chm
  biexponentialTransform            text    html    latex   example chm
  coerce                            text    html    latex   example chm
  compensate                        text    html    latex   example chm
  concreteFilter-class              text    html    latex           chm
  each_col                          text    html    latex   example chm
  ellipsoidGate                     text    html    latex   example chm
  expressionFilter-class            text    html    latex           chm
  filter-and-methods                text    html    latex           chm
  filter-class                      text    html    latex           chm
  filter-in-methods                 text    html    latex           chm
  filter-on-methods                 text    html    latex   example chm
  filter                            text    html    latex   example chm
  filterDetails-methods             text    html    latex           chm
  filterReference-class             text    html    latex           chm
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  filterSet-class                   text    html    latex   example chm
  flowFrame-class                   text    html    latex           chm
  flowSet-class                     text    html    latex   example chm
  flowSet                           text    html    latex           chm
  fsApply                           text    html    latex   example chm
  identifier                        text    html    latex   example chm
  keyword-methods                   text    html    latex   example chm
  linearTransform                   text    html    latex   example chm
  lnTransform                       text    html    latex   example chm
  logTransform                      text    html    latex   example chm
  logicalFilterResult-class         text    html    latex   example chm
  logicleTransform                  text    html    latex   example chm
  manyFilterResult-class            text    html    latex   example chm
  multipleFilterResult-class        text    html    latex   example chm
  norm2Filter-class                 text    html    latex   example chm
  parameterFilter-class             text    html    latex           chm
  parameters                        text    html    latex   example chm
  print.filterSummary               text    html    latex   example chm
  quadraticTransform                text    html    latex   example chm
  randomFilterResult-class          text    html    latex           chm
  read.FCS                          text    html    latex   example chm
  read.FCSheader                    text    html    latex   example chm
  read.flowSet                      text    html    latex   example chm
  rectangleGate                     text    html    latex   example chm
  sampleFilter-class                text    html    latex   example chm
  sampleFilter                      text    html    latex   example chm
  scaleTransform                    text    html    latex   example chm
  setOperationFilter-class          text    html    latex           chm
  spillover-flowSet                 text    html    latex           chm
  splitScaleTransform               text    html    latex   example chm
  transform-class                   text    html    latex   example chm
  transformFilter-class             text    html    latex   example chm
  transformList-class               text    html    latex   example chm
  transformMap-class                text    html    latex   example chm
  truncateTransform                 text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.4404\flowCore\chm\flowCore.chm





Compile time: 0 minutes, 1 second

55	Topics

535	Local links

2	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.4404\flowCore\chm\flowCore.chm, 87,235 bytes

Compression decreased file by 185,831 bytes.

  adding MD5 sums

packaged installation of package 'flowCore' as flowCore_1.5.7.zip
* DONE (flowCore)