factDesign 1.13.0
Denise Scholtens
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/factDesign | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/factDesign.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'factDesign/DESCRIPTION' ... OK
* this is package 'factDesign' version '1.13.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'factDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating factDesign-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'factDesign-Ex.R' failed.
The error most likely occurred in:
> ### * contrasts
>
> flush(stderr()); flush(stdout())
>
> ### Name: contrasts
> ### Title: Construct appropriate lambda matrix and test linear contrasts of
> ### the parameter estimates from a linear model.
> ### Aliases: contrastTest par2lambda
> ### Keywords: models design htest
>
> ### ** Examples
>
>
> data(estrogen)
> ES <- pData(estrogen)[["ES"]]
> TIME <- pData(estrogen)[["TIME"]]
> fit <- lm(exprs(estrogen)["40079_at",] ~ ES + TIME + ES*TIME)
> betaNames <- names(fit[["coef"]])
> betas <- list(c("ESP"),c("ESP","ESP:TIME48h"))
> coefs <- list(c(1),c(1,1))
> lambda <- par2lambda(betaNames,betas,coefs)
Error in lambda[i, betas[[i]]] <- coefs[[i]] :
no 'dimnames' attribute for array
Calls: par2lambda
Execution halted
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/factDesign.Rcheck
---------- Making package factDesign ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'factDesign'
Formats: text html latex example chm
contrasts text html latex example chm
estrogen text html latex example chm
findFC text html latex example chm
kRepsOverA text html latex example chm
outliers text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\factDesign.Rcheck\00_pkg_src\factDesign\chm\factDesign.chm
Compile time: 0 minutes, 0 seconds
6 Topics
14 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\factDesign.Rcheck\00_pkg_src\factDesign\chm\factDesign.chm, 24,433 bytes
Compression decreased file by 74 bytes.
adding MD5 sums
* DONE (factDesign)