codelink 1.7.1
Diego Diez
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/codelink | | Last Changed Rev: 27861 / Revision: 29143 | | Last Changed Date: 2007-10-08 23:24:41 -0700 (Mon, 08 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | WARNINGS | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/codelink.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.7.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'codelink' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files without 'description':
createWeights.Rd
writeCodelink.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating codelink-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating codelink-manual.tex ... OK
* checking codelink-manual.tex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/codelink.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/codelink.Rcheck
---------- Making package codelink ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package codelink for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
not zipping data
installing help
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>>> Building/Updating help pages for package 'codelink'
Formats: text html latex example chm
Codelink-class text html latex example chm
Nondocumented-objects text html latex chm
SNR text html latex chm
arrayNew text html latex example chm
arraySize text html latex chm
as.matrix.Codelink text html latex example chm
bkgdCorrect text html latex example chm
codelink.example text html latex chm
createWeights text html latex example chm
cutCV text html latex example chm
decDetect text html latex chm
dim.Codelink text html latex example chm
fc2Cond text html latex chm
imageCodelink text html latex example chm
logCodelink text html latex example chm
mergeArray text html latex example chm
na2false text html latex example chm
normalize text html latex example chm
normalize.loess text html latex example chm
plotCV text html latex chm
plotCorrelation text html latex example chm
plotDensities text html latex example chm
plotMA text html latex example chm
printHead text html latex chm
readCodelink text html latex example chm
readHeader text html latex example chm
readHeaderXLS text html latex example chm
reportCodelink text html latex chm
selCV text html latex chm
writeCodelink text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\codelink.Rcheck\00_pkg_src\codelink\chm\codelink.chm
Compile time: 0 minutes, 0 seconds
31 Topics
63 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\codelink.Rcheck\00_pkg_src\codelink\chm\codelink.chm, 38,441 bytes
Compression decreased file by 46,615 bytes.
adding MD5 sums
* DONE (codelink)