VanillaICE 1.1.3
Robert Scharpf
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE | | Last Changed Rev: 28928 / Revision: 29143 | | Last Changed Date: 2007-11-27 07:23:14 -0800 (Tue, 27 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/VanillaICE.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* this is package 'VanillaICE' version '1.1.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'VanillaICE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating VanillaICE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating VanillaICE-manual.tex ... OK
* checking VanillaICE-manual.tex ... OK
* Installing *source* package 'VanillaICE' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
** help
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>>> Building/Updating help pages for package 'VanillaICE'
Formats: text html latex example
HmmSnpCallSet-class text html latex example
HmmSnpCopyNumberSet-class text html latex example
HmmSnpSet-class text html latex example
ParHSet-class text html latex example
ParHmmSnpCallSet-class text html latex example
ParHmmSnpCopyNumberSet-class text html latex example
ParHmmSnpSet-class text html latex example
bind text html latex
breakpoints text html latex example
byArm text html latex
calculateEmissionProbability text html latex
callEmission text html latex example
callsIce text html latex
chromosome1 text html latex example
chromosomeArm text html latex
copyNumberIce text html latex
distance text html latex
emissionProbability text html latex
getCallEmission text html latex
getCopyNumberLocation text html latex
getCopyNumberScale text html latex
getHapmapProbabilities text html latex
getInitialStateProbability text html latex example
getLohProbability text html latex
getTransitionProbability text html latex
hSet-class text html latex example
hapmapProbabilities text html latex
hmm text html latex example
hmmBySample text html latex
initialStateProbability text html latex
isMissing text html latex
likelihood text html latex
locationCopyNumber text html latex
numberStates text html latex
pCHOM text html latex example
plotPredictions text html latex
predictions text html latex
scaleCopyNumber text html latex
stateNames text html latex
transitionProbability text html latex
viterbi text html latex
** building package indices ...
* DONE (VanillaICE)