SNPchip 1.3.4
Robert Scharpf
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip | | Last Changed Rev: 29014 / Revision: 29143 | | Last Changed Date: 2007-12-04 06:37:34 -0800 (Tue, 04 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ OK ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/SNPchip.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.3.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
centromere: no visible binding for global variable
'chromosomeAnnotation'
chromosomeSize: no visible binding for global variable
'chromosomeAnnotation'
.drawCentromere: no visible binding for global variable
'chromosomeAnnotation'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SNPchip-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SNPchip-manual.tex ... OK
* checking SNPchip-manual.tex ... OK
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
** help
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>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example
DEPRECATED-classes text html latex
ParESet-class text html latex example
ParSnpCallSet-class text html latex example
ParSnpCopyNumberSet-class text html latex example
ParSnpSet-class text html latex example
addFeatureData-method text html latex
allPlots-methods text html latex
alleleA text html latex
alleleB text html latex
calculateCopyNumber text html latex
centromere text html latex example
chromosome text html latex
chromosomeAnnotation text html latex example
chromosomeSize text html latex example
coerce-methods text html latex
cytoband text html latex example
dbSnpId text html latex example
enzyme text html latex
fragmentLength text html latex
getPar-methods text html latex
getSnpAnnotation text html latex example
hapmap text html latex example
initialize-methods text html latex
plotCytoband text html latex example
plotSnp text html latex example
position text html latex
sample.snpset text html latex example
selectSomeIndex text html latex
show-methods text html latex
showSummary text html latex
smoothSnp text html latex
snpPar text html latex example
summary-methods text html latex
unsplitSnpSet text html latex example
updateObject-methods text html latex
** building package indices ...
* DONE (SNPchip)