Rintact 1.1.4
Tony Chiang
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rintact | | Last Changed Rev: 28674 / Revision: 29143 | | Last Changed Date: 2007-11-13 05:30:16 -0800 (Tue, 13 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/Rintact.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.1.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
‘curEL’
eListHandler : startElement: no visible binding for global variable
‘curEL’
eListHandler : text: no visible binding for global variable ‘curEL’
intactXML2Graph: no visible global function definition for ‘genBPGraph’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SuppMat.tex' ...
LaTeX Warning: Citation `Ewing2007' on page 1 undefined on input line 62.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './SuppMat.tex' ...
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/Rintact.Rcheck
* Installing *source* package 'Rintact' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: graph
Loading required package: hypergraph
** help
Note: removing empty section \references
>>> Building/Updating help pages for package 'Rintact'
Formats: text html latex example
bait text html latex example
complexEntry text html latex
complexes text html latex example
eListHandler text html latex example
intactComplex text html latex
intactGraph text html latex
intactHyperGraph text html latex
intactInteraction text html latex
intactXML2Graph text html latex example
interactionEntry text html latex
interactions text html latex example
interactors text html latex example
list2Matrix text html latex example
organismName text html latex example
prey text html latex example
psi25interaction text html latex example
releaseDate text html latex example
taxId text html latex example
translateIntactID text html latex example
** building package indices ...
* DONE (Rintact)