BSgenome 1.7.1
H. Pages
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BSgenome | | Last Changed Rev: 28208 / Revision: 29143 | | Last Changed Date: 2007-10-24 18:35:11 -0700 (Wed, 24 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/BSgenome.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.7.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/BSgenome.Rcheck
---------- Making package BSgenome ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
preparing package BSgenome for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
installing man source files
installing indices
installing help
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'BSgenome'
Formats: text html latex example chm
BSgenome-class text html latex example chm
available.genomes text html latex example chm
buildDataFiles text html latex chm
getSeq text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm
Compile time: 0 minutes, 0 seconds
5 Topics
46 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 24,909 bytes
Compression decreased file by 7,940 bytes.
adding MD5 sums
* DONE (BSgenome)