tinesath1probe 1.0.9
Tine Casneuf
| Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/tinesath1probe | | Last Changed Rev: 2317 / Revision: 2510 | | Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tinesath1probe/DESCRIPTION' ... OK
* this is package 'tinesath1probe' version '1.0.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tinesath1probe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found directory 'R' with no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
Error in tools:::.check_packages_used(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Error in tools::checkS3methods(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
Error in tools::checkReplaceFuns(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
Error in tools::checkFF(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
Error in tools::codocClasses(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
* checking Rd \usage sections ... NOTE
Error in tools::checkDocStyle(package = "tinesath1probe") :
directory 'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.buildbin-libdir/tinesath1probe' does not contain R code
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
tinesath1probe.rda 3.5Mb 2.5Mb xz
* checking examples ...
** running examples for arch 'i386' ... [10s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
tinesath1probe 5.68 0.28 5.96
** running examples for arch 'x64' ... [12s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
tinesath1probe 7.16 0.28 7.44
* checking PDF version of manual ... OK
WARNING: There were 6 warnings.
NOTE: There were 2 notes.
See
'E:/biocbld/bbs-2.12-data-experiment/meat/tinesath1probe.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'tinesath1probe' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'tinesath1probe' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tinesath1probe' as tinesath1probe_1.0.9.zip
* DONE (tinesath1probe)