BioC experimental data: CHECK report for hmyriB36 on george2

Package: hmyriB36

Version: 0.99.17

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings hmyriB36_0.99.17.tar.gz

StartedAt: 2013-10-08 12:54:28 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:00:22 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 353.7 seconds

RetCode: 0

Status:  OK

CheckDir: hmyriB36.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/hmyriB36.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hmyriB36/DESCRIPTION’ ... OK
* this is package ‘hmyriB36’ version ‘0.99.17’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hmyriB36’ can be installed ... [34s/36s] OK
* checking installed package size ... NOTE
  installed size is 79.8Mb
  sub-directories of 1Mb or more:
    data   21.1Mb
    parts  58.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘hmyriB36/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""))
    packageStartupMessage(paste("available chromosomes are named ",     paste(selectSome(cn), collapse = ", ")))

See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [43s/45s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
hmyriB36-pkg 27.246    0.8   29.73
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/hmyriB36.Rcheck/00check.log’
for details.

* installing *source* package ‘hmyriB36’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (hmyriB36)

name	user	system	elapsed
hmyriB36-pkg	27.246	0.800	29.730