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BioC experimental data: CHECK report for parathyroid on petty

This page was generated on 2013-10-08 16:07:37 -0700 (Tue, 08 Oct 2013).

Package 110/156HostnameOS / ArchBUILDCHECKBUILD BIN
parathyroid 0.99.6
Michael Love
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/parathyroid
Last Changed Rev: 2341 / Revision: 2510
Last Changed Date: 2013-05-11 01:34:10 -0700 (Sat, 11 May 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: parathyroid
Version: 0.99.6
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch parathyroid_0.99.6.tar.gz
StartedAt: 2013-10-08 14:17:43 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 14:20:53 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 190.0 seconds
RetCode: 0
Status:  OK 
CheckDir: parathyroid.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/parathyroid.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'parathyroid/DESCRIPTION' ... OK
* this is package 'parathyroid' version '0.99.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'parathyroid' can be installed ... [9s/9s] OK
* checking installed package size ... NOTE
  installed size is 14.1Mb
  sub-directories of 1Mb or more:
    data  13.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 2 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/parathyroid.Rcheck/00check.log'
for details.

parathyroid.Rcheck/00install.out:

* installing *source* package 'parathyroid' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (parathyroid)