BioC experimental data: CHECK report for gcspikelite on petty

Package: gcspikelite

Version: 1.0.9

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch gcspikelite_1.0.9.tar.gz

StartedAt: 2013-10-08 13:57:59 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:58:24 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 24.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: gcspikelite.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/gcspikelite.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'gcspikelite/DESCRIPTION' ... OK
* this is package 'gcspikelite' version '1.0.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'gcspikelite' can be installed ... [1s/3s] OK
* checking installed package size ... NOTE
  installed size is 67.7Mb
  sub-directories of 1Mb or more:
    data  67.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  '0709_468.CDF' '0709_468.ELU' '0709_470.CDF' '0709_470.ELU'
  '0709_471.CDF' '0709_471.ELU' '0709_474.CDF' '0709_474.ELU'
  '0709_475.CDF' '0709_475.ELU' '0709_479.CDF' '0709_479.ELU'
  '0709_485.CDF' '0709_485.ELU' '0709_493.CDF' '0709_493.ELU'
  '0709_496.CDF' '0709_496.ELU' 'chromaTOFex.tof'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/gcspikelite.Rcheck/00check.log'
for details.

* installing *source* package 'gcspikelite' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gcspikelite)